Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36932 * 119.99832 * 2 1 4 4 H 1.08006 * 119.99444 * 162.33129 * 3 2 1 5 5 C 1.38813 * 120.00349 * 342.05041 * 3 2 1 6 6 N 1.31613 * 119.99806 * 344.17149 * 5 3 2 7 7 Si 1.86806 * 119.99930 * 164.16980 * 5 3 2 8 8 H 1.48503 * 109.47020 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46997 * 120.00232 * 7 5 3 10 10 H 1.48503 * 109.46849 * 240.00503 * 7 5 3 11 11 C 1.46497 * 119.99627 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.47164 * 179.97438 * 11 2 1 13 13 C 1.53001 * 109.47115 * 299.99740 * 11 2 1 14 14 N 1.46899 * 109.47178 * 305.00254 * 13 11 2 15 15 C 1.53007 * 109.47218 * 59.99906 * 11 2 1 16 16 C 1.52994 * 117.49750 * 248.74388 * 15 11 2 17 17 C 1.53001 * 117.49498 * 180.08364 * 15 11 2 18 18 H 1.09000 * 109.47281 * 84.86003 * 1 2 3 19 19 H 1.08990 * 109.47159 * 204.86416 * 1 2 3 20 20 H 1.08995 * 109.46790 * 324.86475 * 1 2 3 21 21 H 0.97001 * 119.99887 * 179.97438 * 6 5 3 22 22 H 1.08999 * 109.47112 * 65.00533 * 13 11 2 23 23 H 1.09006 * 109.46871 * 185.00126 * 13 11 2 24 24 H 1.00896 * 110.99777 * 56.04062 * 14 13 11 25 25 H 1.00893 * 111.00246 * 180.02562 * 14 13 11 26 26 H 1.08996 * 115.55005 * 34.41946 * 15 11 2 27 27 H 1.09008 * 117.49834 * 0.02562 * 16 15 11 28 28 H 1.08994 * 117.49922 * 145.02058 * 16 15 11 29 29 H 1.09003 * 117.49769 * 214.97440 * 17 15 11 30 30 H 1.08998 * 117.50102 * 359.97438 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1915 1.2079 0.2839 5 6 1.5063 2.3588 -0.3705 6 7 0.3578 2.3053 -1.0108 7 14 2.2708 4.0131 0.0400 8 1 3.5531 3.8013 0.7583 9 1 2.5241 4.7662 -1.2145 10 1 1.3425 4.7869 0.9031 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0696 -0.0009 13 6 1.8278 -2.0716 1.2484 14 7 2.0713 -1.2552 2.4451 15 6 1.8278 -2.0705 -1.2502 16 6 1.0114 -3.3494 -1.0531 17 6 2.4913 -3.4368 -1.4348 18 1 -0.3634 0.0921 -1.0235 19 1 -0.3633 -0.9323 0.4321 20 1 -0.3633 0.8404 0.5914 21 1 -0.0920 3.1249 -1.2694 22 1 0.7741 -2.3469 1.2046 23 1 2.4376 -2.9740 1.2938 24 1 1.5668 -0.3828 2.3964 25 1 1.8351 -1.7636 3.2839 26 1 1.6316 -1.4812 -2.1459 27 1 0.7373 -3.6193 -0.0332 28 1 0.2784 -3.6016 -1.8192 29 1 2.7311 -3.7465 -2.4520 30 1 3.1914 -3.7642 -0.6662 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126743456.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = 32.685298 kcal Electronic energy + Delta-G solvation = -11811.691570 eV Core-core repulsion = 9835.871224 eV Total energy + Delta-G solvation = -1975.820347 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68119 -36.57595 -34.68101 -32.57663 -28.69430 -27.93283 -24.86390 -23.41125 -23.01184 -19.82672 -18.75559 -17.26528 -16.69527 -16.52481 -15.87739 -15.01263 -14.70724 -14.46884 -13.86109 -13.31486 -12.96793 -12.81390 -12.49875 -12.40122 -12.21859 -11.93884 -11.90028 -11.84292 -11.07642 -10.66999 -10.59111 -9.41460 -8.75317 -7.78403 -5.20038 1.46769 1.48906 1.59535 2.53665 3.02637 3.34132 3.65252 3.82189 4.11330 4.17080 4.28593 4.45200 4.51500 4.71938 4.83601 4.98201 5.00074 5.15467 5.25604 5.33286 5.39102 5.42401 5.69050 5.75743 6.36296 6.40553 6.79983 7.20293 7.94481 8.36193 9.25391 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.049960 B = 0.013042 C = 0.012035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.311399 B = 2146.335313 C = 2326.015492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.600 5.600 3 C -0.244 4.244 4 H 0.068 0.932 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.965 3.035 8 H -0.269 1.269 9 H -0.297 1.297 10 H -0.292 1.292 11 C 0.201 3.799 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.852 5.852 15 C -0.179 4.179 16 C -0.176 4.176 17 C -0.162 4.162 18 H -0.005 1.005 19 H 0.024 0.976 20 H 0.016 0.984 21 H 0.245 0.755 22 H 0.026 0.974 23 H 0.081 0.919 24 H 0.343 0.657 25 H 0.341 0.659 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -10.064 3.154 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.322 5.322 3 C -0.374 4.374 4 H 0.086 0.914 5 C -0.253 4.253 6 N -0.591 5.591 7 Si 0.794 3.206 8 H -0.193 1.193 9 H -0.225 1.225 10 H -0.219 1.219 11 C 0.094 3.906 12 H 0.070 0.930 13 C -0.071 4.071 14 N -0.383 5.383 15 C -0.200 4.200 16 C -0.213 4.213 17 C -0.200 4.200 18 H 0.013 0.987 19 H 0.042 0.958 20 H 0.035 0.965 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.099 0.901 24 H 0.156 0.844 25 H 0.153 0.847 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.293 -9.935 2.887 10.597 hybrid contribution -0.976 1.203 -0.114 1.553 sum 1.318 -8.732 2.773 9.256 Atomic orbital electron populations 1.20368 0.82994 0.95210 0.97144 1.44106 1.01677 1.01043 1.85345 1.19573 0.95631 0.85697 1.36526 0.91421 1.25604 0.98578 1.01193 0.99879 1.70281 1.19274 1.26397 1.43148 0.85224 0.77957 0.80486 0.76930 1.19317 1.22451 1.21923 1.20042 0.94830 0.84783 0.90935 0.92981 1.22200 0.98170 0.95792 0.90958 1.58574 1.66949 1.08737 1.04058 1.22892 1.06839 0.90196 1.00073 1.23114 0.94439 1.00723 1.03042 1.23008 0.95419 0.98505 1.03049 0.98665 0.95808 0.96483 0.94589 0.95613 0.90056 0.84361 0.84653 0.91391 0.87689 0.89058 0.88257 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.36 8.30 127.77 1.06 10.42 16 2 N -0.60 -29.77 1.89 -702.77 -1.33 -31.10 16 3 C -0.24 -13.54 9.64 84.03 0.81 -12.73 16 4 H 0.07 3.75 7.79 -2.91 -0.02 3.73 16 5 C -0.06 -3.33 5.06 84.86 0.43 -2.90 16 6 N -0.94 -56.72 10.58 21.65 0.23 -56.49 16 7 Si 0.96 46.24 29.58 68.60 2.03 48.27 16 8 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 10 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 11 C 0.20 8.23 2.80 44.99 0.13 8.36 16 12 H 0.05 2.30 7.83 -2.38 -0.02 2.28 16 13 C 0.06 2.03 4.73 86.30 0.41 2.44 16 14 N -0.85 -29.06 9.62 -186.71 -1.80 -30.85 16 15 C -0.18 -6.59 5.48 -10.79 -0.06 -6.65 16 16 C -0.18 -5.07 9.59 30.62 0.29 -4.77 16 17 C -0.16 -4.43 9.94 30.62 0.30 -4.13 16 18 H 0.00 -0.28 7.46 -2.39 -0.02 -0.30 16 19 H 0.02 1.02 6.53 -2.39 -0.02 1.00 16 20 H 0.02 0.90 7.07 -2.39 -0.02 0.88 16 21 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 22 H 0.03 0.85 5.33 -2.39 -0.01 0.83 16 23 H 0.08 2.32 7.44 -2.38 -0.02 2.31 16 24 H 0.34 13.51 8.12 -89.70 -0.73 12.78 16 25 H 0.34 9.29 9.08 -89.70 -0.81 8.48 16 26 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.10 2.78 5.80 -2.38 -0.01 2.77 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.10 2.55 7.66 -2.39 -0.02 2.54 16 Total: -1.00 -62.00 241.37 2.10 -59.90 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.40 Total: 20.24 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 3.37 Total: -9.97 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -2.89 Total: -118.44 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -62.00 2.10 -59.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126743456.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.582 kcal (2) G-P(sol) polarization free energy of solvation -61.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds