Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48492 * 109.47251 * 240.00003 * 3 2 1 5 5 H 1.48502 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47341 * 119.99679 * 3 2 1 7 7 C 1.37870 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00267 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47507 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00454 * 174.79906 * 10 9 7 12 12 C 1.53000 * 112.90279 * 292.19588 * 11 10 9 13 13 O 1.42902 * 109.47240 * 311.88539 * 12 11 10 14 14 C 1.53780 * 113.61338 * 63.44365 * 11 10 9 15 15 C 1.53779 * 87.08316 * 89.11657 * 14 11 10 16 16 C 1.53778 * 113.61674 * 160.94092 * 11 10 9 17 17 H 0.97003 * 119.99605 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.46901 * 59.99564 * 9 7 2 19 19 H 1.09007 * 109.46981 * 300.00097 * 9 7 2 20 20 H 1.00902 * 110.99685 * 298.75539 * 10 9 7 21 21 H 1.08994 * 109.47650 * 71.89127 * 12 11 10 22 22 H 1.09008 * 109.46608 * 191.89004 * 12 11 10 23 23 H 0.96697 * 114.00238 * 180.02562 * 13 12 11 24 24 H 1.09010 * 113.61013 * 334.56790 * 14 11 10 25 25 H 1.09000 * 113.69108 * 203.68305 * 14 11 10 26 26 H 1.08991 * 113.61389 * 139.97941 * 15 14 11 27 27 H 1.09003 * 113.61327 * 270.88868 * 15 14 11 28 28 H 1.08997 * 113.61534 * 156.33737 * 16 11 10 29 29 H 1.08998 * 113.61138 * 25.43227 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0015 11 6 1.5094 -4.9035 0.1217 12 6 0.8488 -5.0948 1.4884 13 8 1.7828 -4.7674 2.5191 14 6 0.5786 -5.2162 -1.0617 15 6 1.7912 -5.8760 -1.7394 16 6 2.3554 -6.1065 -0.3275 17 1 -0.4850 0.8401 -0.0004 18 1 0.6247 -2.5562 -0.8919 19 1 0.6239 -2.5575 0.8881 20 1 2.7855 -3.5957 -0.8269 21 1 -0.0212 -4.4429 1.5660 22 1 0.5356 -6.1332 1.5983 23 1 1.4313 -4.8664 3.4145 24 1 0.2183 -4.3278 -1.5805 25 1 -0.2200 -5.9168 -0.8176 26 1 1.5480 -6.7975 -2.2682 27 1 2.3847 -5.1863 -2.3395 28 1 2.0433 -7.0507 0.1187 29 1 3.4296 -5.9368 -0.2535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129466543.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = -31.641665 kcal Electronic energy + Delta-G solvation = -11659.402506 eV Core-core repulsion = 9583.074071 eV Total energy + Delta-G solvation = -2076.328435 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.30439 -35.59366 -33.54087 -31.47654 -27.59638 -26.01020 -25.28120 -22.28811 -21.27492 -18.08883 -16.69654 -16.39253 -15.38247 -14.90528 -14.44579 -13.95784 -13.22683 -12.86463 -12.51993 -11.98665 -11.70405 -11.58215 -11.04670 -10.82002 -10.62297 -10.31102 -10.15269 -9.95587 -9.69891 -9.22179 -9.12766 -8.40144 -7.14236 -5.97236 -3.97858 3.37825 3.40854 3.44980 4.46790 4.63817 4.99045 5.07499 5.16702 5.30947 5.38420 5.51196 5.77449 5.96133 5.98293 6.11517 6.15576 6.26410 6.45624 6.59647 6.69345 7.36266 7.47805 7.86809 8.17791 8.25451 8.52299 8.70663 9.10972 9.66172 11.13857 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.051981 B = 0.010778 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.529018 B = 2597.264913 C = 2766.565900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.198 3.802 10 N -0.651 5.651 11 C 0.103 3.897 12 C 0.101 3.899 13 O -0.547 6.547 14 C -0.175 4.175 15 C -0.142 4.142 16 C -0.131 4.131 17 H 0.261 0.739 18 H -0.013 1.013 19 H 0.028 0.972 20 H 0.327 0.673 21 H 0.043 0.957 22 H 0.035 0.965 23 H 0.362 0.638 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -10.597 -0.042 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.071 3.929 10 N -0.280 5.280 11 C 0.010 3.990 12 C 0.023 3.977 13 O -0.349 6.349 14 C -0.215 4.215 15 C -0.179 4.179 16 C -0.169 4.169 17 H 0.070 0.930 18 H 0.004 0.996 19 H 0.046 0.954 20 H 0.144 0.856 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.207 0.793 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.125 -10.278 0.118 10.340 hybrid contribution -0.526 0.735 -0.442 1.006 sum 0.599 -9.543 -0.324 9.567 Atomic orbital electron populations 1.69957 1.06050 1.26737 1.51348 1.24975 0.94876 0.99279 0.95524 0.86543 0.79404 0.82693 0.78640 1.20328 1.21415 1.20166 1.21164 0.93546 0.90238 1.49746 0.92072 1.19523 0.90596 0.87131 0.95618 1.60521 1.23519 0.99837 1.44147 1.22016 0.93455 0.92046 0.91521 1.22046 0.91497 0.96574 0.87598 1.86706 1.40435 1.91534 1.16222 1.23655 0.97324 1.01200 0.99319 1.22791 0.98144 1.00372 0.96602 1.23067 1.00500 0.97706 0.95641 0.92988 0.99573 0.95355 0.85599 0.93874 0.94690 0.79323 0.90632 0.90677 0.91918 0.90301 0.90473 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 15 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 7 C -0.51 -14.92 9.36 -34.44 -0.32 -15.25 15 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 15 9 C 0.20 5.34 5.06 -4.98 -0.03 5.31 15 10 N -0.65 -14.84 6.13 -100.40 -0.62 -15.46 15 11 C 0.10 1.92 0.92 -130.79 -0.12 1.80 15 12 C 0.10 1.80 6.07 37.16 0.23 2.02 15 13 O -0.55 -10.20 13.41 -35.23 -0.47 -10.67 15 14 C -0.18 -2.93 7.16 -25.92 -0.19 -3.12 15 15 C -0.14 -2.07 7.75 -25.92 -0.20 -2.27 15 16 C -0.13 -2.03 7.31 -25.92 -0.19 -2.22 15 17 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 18 H -0.01 -0.38 6.69 -51.93 -0.35 -0.72 15 19 H 0.03 0.83 6.88 -51.92 -0.36 0.47 15 20 H 0.33 7.13 7.94 -39.29 -0.31 6.82 15 21 H 0.04 0.82 7.35 -51.93 -0.38 0.43 15 22 H 0.04 0.51 7.93 -51.92 -0.41 0.10 15 23 H 0.36 4.84 9.12 45.56 0.42 5.25 15 24 H 0.08 1.44 6.61 -51.92 -0.34 1.10 15 25 H 0.07 1.10 8.10 -51.93 -0.42 0.68 15 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.08 1.18 7.75 -51.93 -0.40 0.78 15 28 H 0.08 1.05 7.95 -51.93 -0.41 0.63 15 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 LS Contribution 241.50 15.07 3.64 3.64 Total: -1.00 -32.32 241.50 -6.01 -38.34 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.36 Total: 5.82 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.92 Total: -12.23 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.12 Total: -42.13 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.47 Total: -10.67 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.32 -6.01 -38.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129466543.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.694 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds