Wall clock time and date at job start Mon Mar 30 2020 02:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48492 * 109.47251 * 240.00003 * 3 2 1 5 5 H 1.48502 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47341 * 119.99679 * 3 2 1 7 7 C 1.37870 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00267 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47507 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00454 * 174.79906 * 10 9 7 12 12 C 1.53000 * 112.90279 * 292.19588 * 11 10 9 13 13 O 1.42902 * 109.47240 * 311.88539 * 12 11 10 14 14 C 1.53780 * 113.61338 * 63.44365 * 11 10 9 15 15 C 1.53779 * 87.08316 * 89.11657 * 14 11 10 16 16 C 1.53778 * 113.61674 * 160.94092 * 11 10 9 17 17 H 0.97003 * 119.99605 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.46901 * 59.99564 * 9 7 2 19 19 H 1.09007 * 109.46981 * 300.00097 * 9 7 2 20 20 H 1.00902 * 110.99685 * 298.75539 * 10 9 7 21 21 H 1.08994 * 109.47650 * 71.89127 * 12 11 10 22 22 H 1.09008 * 109.46608 * 191.89004 * 12 11 10 23 23 H 0.96697 * 114.00238 * 180.02562 * 13 12 11 24 24 H 1.09010 * 113.61013 * 334.56790 * 14 11 10 25 25 H 1.09000 * 113.69108 * 203.68305 * 14 11 10 26 26 H 1.08991 * 113.61389 * 139.97941 * 15 14 11 27 27 H 1.09003 * 113.61327 * 270.88868 * 15 14 11 28 28 H 1.08997 * 113.61534 * 156.33737 * 16 11 10 29 29 H 1.08998 * 113.61138 * 25.43227 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0015 11 6 1.5094 -4.9035 0.1217 12 6 0.8488 -5.0948 1.4884 13 8 1.7828 -4.7674 2.5191 14 6 0.5786 -5.2162 -1.0617 15 6 1.7912 -5.8760 -1.7394 16 6 2.3554 -6.1065 -0.3275 17 1 -0.4850 0.8401 -0.0004 18 1 0.6247 -2.5562 -0.8919 19 1 0.6239 -2.5575 0.8881 20 1 2.7855 -3.5957 -0.8269 21 1 -0.0212 -4.4429 1.5660 22 1 0.5356 -6.1332 1.5983 23 1 1.4313 -4.8664 3.4145 24 1 0.2183 -4.3278 -1.5805 25 1 -0.2200 -5.9168 -0.8176 26 1 1.5480 -6.7975 -2.2682 27 1 2.3847 -5.1863 -2.3395 28 1 2.0433 -7.0507 0.1187 29 1 3.4296 -5.9368 -0.2535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129466543.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:11 Heat of formation + Delta-G solvation = -57.575166 kcal Electronic energy + Delta-G solvation = -11660.527067 eV Core-core repulsion = 9583.074071 eV Total energy + Delta-G solvation = -2077.452996 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.71859 -36.99688 -35.60422 -33.46793 -29.16855 -27.94555 -26.64599 -24.10367 -22.85700 -19.61484 -18.51464 -18.09620 -16.94556 -16.55320 -16.32110 -15.33743 -14.77825 -14.64701 -14.35664 -13.72702 -13.24518 -13.17657 -12.78640 -12.58966 -12.39083 -12.09082 -11.65513 -11.51097 -11.25683 -11.10528 -10.67371 -10.59678 -8.97675 -8.21687 -6.32356 1.39446 1.43693 1.51633 2.39958 3.10640 3.26924 3.63573 3.67458 3.84650 3.97085 4.23947 4.44559 4.67844 4.72743 4.79755 4.81742 4.98951 5.08325 5.14499 5.29187 5.37887 5.43188 5.64579 6.07083 6.54307 6.76563 6.89895 7.07862 7.38008 8.89296 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.051981 B = 0.010778 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.529018 B = 2597.264913 C = 2766.565900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.219 3.781 10 N -0.658 5.658 11 C 0.074 3.926 12 C 0.101 3.899 13 O -0.572 6.572 14 C -0.173 4.173 15 C -0.130 4.130 16 C -0.115 4.115 17 H 0.265 0.735 18 H -0.038 1.038 19 H -0.002 1.002 20 H 0.329 0.671 21 H 0.017 0.983 22 H 0.077 0.923 23 H 0.383 0.617 24 H 0.040 0.960 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -11.526 -0.177 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.077 0.923 9 C 0.092 3.908 10 N -0.287 5.287 11 C -0.019 4.019 12 C 0.022 3.978 13 O -0.378 6.378 14 C -0.213 4.213 15 C -0.167 4.167 16 C -0.153 4.153 17 H 0.074 0.926 18 H -0.020 1.020 19 H 0.016 0.984 20 H 0.147 0.853 21 H 0.036 0.964 22 H 0.095 0.905 23 H 0.231 0.769 24 H 0.059 0.941 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.892 -11.237 -0.008 11.395 hybrid contribution -0.803 0.966 -0.362 1.307 sum 1.089 -10.271 -0.370 10.335 Atomic orbital electron populations 1.70085 1.07720 1.27972 1.51685 1.25938 0.95830 1.03289 0.94625 0.85387 0.78138 0.77666 0.79101 1.19085 1.20519 1.19526 1.21537 0.93662 0.91762 1.50439 0.92331 1.19064 0.90421 0.88414 0.92904 1.60383 1.23162 1.00835 1.44330 1.22407 0.95275 0.91292 0.92912 1.22130 0.90268 0.98323 0.87053 1.86634 1.41397 1.91914 1.17866 1.23640 0.98610 1.00656 0.98350 1.22749 0.96301 1.01208 0.96460 1.23029 0.99627 0.96999 0.95649 0.92649 1.02016 0.98428 0.85327 0.96435 0.90472 0.76938 0.94066 0.88082 0.88686 0.91231 0.87531 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.29 21.44 0.28 -57.65 15 2 C 0.00 0.06 5.46 84.65 0.46 0.53 15 3 Si 0.97 45.79 29.54 68.60 2.03 47.81 15 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 7 C -0.54 -32.17 9.36 25.60 0.24 -31.93 15 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 15 9 C 0.22 12.32 5.06 85.56 0.43 12.76 15 10 N -0.66 -30.50 6.13 -471.55 -2.89 -33.39 15 11 C 0.07 2.69 0.92 4.05 0.00 2.70 15 12 C 0.10 3.47 6.07 71.98 0.44 3.91 15 13 O -0.57 -20.96 13.41 -148.98 -2.00 -22.96 15 14 C -0.17 -5.63 7.16 31.12 0.22 -5.41 15 15 C -0.13 -3.48 7.75 31.12 0.24 -3.24 15 16 C -0.12 -3.24 7.31 31.12 0.23 -3.01 15 17 H 0.26 15.37 8.31 -92.71 -0.77 14.60 15 18 H -0.04 -2.25 6.69 -2.39 -0.02 -2.26 15 19 H 0.00 -0.15 6.88 -2.38 -0.02 -0.16 15 20 H 0.33 14.62 7.94 -89.69 -0.71 13.90 15 21 H 0.02 0.68 7.35 -2.39 -0.02 0.66 15 22 H 0.08 2.00 7.93 -2.38 -0.02 1.98 15 23 H 0.38 9.89 9.12 -74.06 -0.68 9.22 15 24 H 0.04 1.61 6.61 -2.38 -0.02 1.60 15 25 H 0.10 2.73 8.10 -2.39 -0.02 2.71 15 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 27 H 0.07 1.99 7.75 -2.39 -0.02 1.97 15 28 H 0.11 2.40 7.95 -2.39 -0.02 2.38 15 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -70.35 241.50 -0.55 -70.90 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.24 Total: 18.97 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 2.27 Total: -23.69 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.60 Total: -91.04 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -2.00 Total: -22.96 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -70.35 -0.55 -70.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129466543.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.321 kcal (2) G-P(sol) polarization free energy of solvation -70.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds