Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99870 * 2 1 4 4 H 1.09003 * 110.28760 * 324.32598 * 3 2 1 5 5 C 1.54264 * 110.32302 * 86.45396 * 3 2 1 6 6 C 1.54379 * 105.05895 * 118.89546 * 5 3 2 7 7 N 1.48560 * 104.59522 * 23.85388 * 6 5 3 8 8 C 1.46898 * 111.00344 * 200.96199 * 7 6 5 9 9 C 1.50705 * 109.46819 * 290.12542 * 8 7 6 10 10 H 1.08004 * 119.99796 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00109 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00333 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00219 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47154 * 89.99774 * 13 11 9 15 15 H 1.48498 * 109.47631 * 210.00292 * 13 11 9 16 16 H 1.48507 * 109.46912 * 330.00216 * 13 11 9 17 17 C 1.48568 * 104.22317 * 320.51634 * 7 6 5 18 18 H 1.08995 * 109.47111 * 59.99900 * 1 2 3 19 19 H 1.09004 * 109.47067 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47031 * 299.99620 * 1 2 3 21 21 H 1.00901 * 111.00067 * 123.95175 * 2 1 3 22 22 H 1.08995 * 110.32183 * 237.78931 * 5 3 2 23 23 H 1.09002 * 110.31999 * 0.02562 * 5 3 2 24 24 H 1.08994 * 110.41529 * 142.63087 * 6 5 3 25 25 H 1.08999 * 110.41424 * 265.07463 * 6 5 3 26 26 H 1.08998 * 109.47232 * 50.11763 * 8 7 6 27 27 H 1.08994 * 109.47631 * 170.12327 * 8 7 6 28 28 H 0.96997 * 120.00222 * 180.02562 * 12 11 9 29 29 H 1.09003 * 110.40957 * 280.70768 * 17 7 6 30 30 H 1.08992 * 110.41156 * 158.26366 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3555 2.0220 -0.5962 5 6 2.1039 1.9038 1.4438 6 6 3.6048 2.2004 1.6503 7 7 4.1364 2.4128 0.2794 8 6 5.5916 2.2156 0.2426 9 6 6.2699 3.3417 0.9795 10 1 5.6789 4.1257 1.4298 11 6 7.6447 3.3712 1.0790 12 7 8.2366 4.3537 1.7226 13 14 8.6669 2.0157 0.2997 14 1 9.0079 2.3929 -1.0955 15 1 9.9157 1.8262 1.0806 16 1 7.8895 0.7504 0.2945 17 6 3.4399 1.3914 -0.5445 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.8306 -0.5261 0.7814 22 1 1.5187 2.8164 1.5558 23 1 1.7670 1.1472 2.1525 24 1 3.7353 3.0998 2.2520 25 1 4.0988 1.3512 2.1223 26 1 5.8420 1.2674 0.7183 27 1 5.9306 2.2031 -0.7932 28 1 9.2038 4.3746 1.7922 29 1 3.9080 0.4155 -0.4159 30 1 3.4462 1.6816 -1.5951 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145162806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = -16.326772 kcal Electronic energy + Delta-G solvation = -11390.092727 eV Core-core repulsion = 9412.147058 eV Total energy + Delta-G solvation = -1977.945670 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.09427 -36.45375 -34.68763 -32.03428 -29.73694 -28.41575 -25.24298 -24.03162 -21.77720 -21.43189 -18.91748 -17.29177 -16.93133 -16.03971 -15.75467 -15.11417 -14.90307 -14.60035 -14.32306 -13.74638 -13.50873 -13.01719 -12.78901 -12.56687 -12.31462 -12.11017 -12.03643 -11.82132 -11.66799 -11.40909 -10.80692 -9.36703 -9.23200 -8.31195 -6.35470 1.33559 1.34776 1.45824 2.32461 3.01285 3.08114 3.55496 3.72767 3.88174 4.13288 4.40007 4.49756 4.65580 4.66541 4.70737 4.82735 4.85238 4.91237 5.05846 5.08070 5.10750 5.16655 5.49171 5.92072 5.97757 6.22953 6.44172 6.56904 6.70082 7.28565 8.85562 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.077792 B = 0.009460 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.846431 B = 2959.011438 C = 3179.669337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.695 5.695 3 C 0.094 3.906 4 H 0.092 0.908 5 C -0.140 4.140 6 C 0.046 3.954 7 N -0.522 5.522 8 C 0.163 3.837 9 C -0.520 4.520 10 H 0.035 0.965 11 C 0.008 3.992 12 N -0.947 5.947 13 Si 0.950 3.050 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.253 1.253 17 C 0.037 3.963 18 H 0.066 0.934 19 H 0.080 0.920 20 H 0.028 0.972 21 H 0.345 0.655 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.030 0.970 26 H -0.010 1.010 27 H 0.028 0.972 28 H 0.268 0.732 29 H 0.040 0.960 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.132 -10.199 -2.874 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.326 5.326 3 C -0.016 4.016 4 H 0.110 0.890 5 C -0.180 4.180 6 C -0.083 4.083 7 N -0.247 5.247 8 C 0.035 3.965 9 C -0.558 4.558 10 H 0.053 0.947 11 C -0.190 4.190 12 N -0.588 5.588 13 Si 0.773 3.227 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.177 1.177 17 C -0.091 4.091 18 H 0.084 0.916 19 H 0.099 0.901 20 H 0.046 0.954 21 H 0.164 0.836 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.008 0.992 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.025 -9.670 -3.713 16.642 hybrid contribution 0.975 -0.485 1.184 1.609 sum -12.051 -10.155 -2.529 15.960 Atomic orbital electron populations 1.22256 0.86320 1.02694 1.00796 1.60470 1.09130 1.12626 1.50358 1.22202 0.94878 0.89737 0.94828 0.88973 1.23015 0.94847 1.02253 0.97842 1.22853 0.94986 0.99176 0.91246 1.65230 1.05412 1.45920 1.08096 1.20072 0.86074 0.94302 0.96038 1.21228 0.91883 1.08602 1.34112 0.94697 1.25880 0.99114 0.98433 0.95538 1.70050 1.10411 1.34097 1.44218 0.85679 0.78113 0.79918 0.79033 1.18845 1.20398 1.17668 1.23135 0.94011 0.93550 0.98409 0.91561 0.90149 0.95363 0.83639 0.90525 0.89821 0.92738 0.95182 0.99187 0.95438 0.92305 0.94150 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.54 127.69 1.35 1.83 16 2 N -0.70 -15.60 6.58 -509.92 -3.36 -18.96 16 3 C 0.09 2.55 3.36 45.81 0.15 2.70 16 4 H 0.09 2.37 7.86 -2.39 -0.02 2.36 16 5 C -0.14 -3.90 6.58 31.49 0.21 -3.69 16 6 C 0.05 1.78 5.97 86.45 0.52 2.29 16 7 N -0.52 -22.61 5.36 -886.05 -4.75 -27.36 16 8 C 0.16 8.15 3.64 85.56 0.31 8.46 16 9 C -0.52 -31.14 9.37 25.60 0.24 -30.90 16 10 H 0.03 2.33 7.85 -2.91 -0.02 2.31 16 11 C 0.01 0.46 5.47 84.65 0.46 0.92 16 12 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 13 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 14 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 17 C 0.04 1.28 6.20 86.45 0.54 1.82 16 18 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 19 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 20 H 0.03 0.45 8.11 -2.39 -0.02 0.43 16 21 H 0.35 7.29 8.31 -89.69 -0.75 6.55 16 22 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.08 1.94 7.64 -2.39 -0.02 1.93 16 24 H 0.05 2.35 7.94 -2.39 -0.02 2.33 16 25 H 0.03 1.18 7.82 -2.39 -0.02 1.16 16 26 H -0.01 -0.47 6.94 -2.39 -0.02 -0.49 16 27 H 0.03 1.36 7.56 -2.39 -0.02 1.34 16 28 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 29 H 0.04 1.39 7.91 -2.39 -0.02 1.37 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -66.95 244.00 -1.85 -68.80 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.30 Total: 7.22 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 3.77 Total: -16.57 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -7.81 Total: -106.24 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -66.95 -1.85 -68.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145162806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.476 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds