Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00360 * 2 1 4 4 H 1.48500 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47199 * 299.99556 * 3 2 1 6 6 H 1.48505 * 109.47326 * 59.99812 * 3 2 1 7 7 C 1.37884 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99717 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00141 * 359.97438 * 7 2 1 10 10 O 1.42903 * 108.63477 * 61.75273 * 9 7 2 11 11 C 1.50460 * 108.77150 * 180.02562 * 9 7 2 12 12 C 1.54510 * 108.96139 * 213.13655 * 11 9 7 13 13 C 1.45871 * 111.58445 * 282.75776 * 12 11 9 14 14 N 1.47803 * 112.92074 * 61.32310 * 13 12 11 15 15 C 1.44271 * 109.45883 * 276.72658 * 14 13 12 16 16 C 1.54066 * 111.97379 * 96.44465 * 15 14 13 17 17 H 0.97007 * 120.00106 * 0.02562 * 1 2 3 18 18 H 0.96695 * 114.00682 * 298.24733 * 10 9 7 19 19 H 1.09002 * 109.57372 * 93.25745 * 11 9 7 20 20 H 1.08998 * 109.57079 * 333.00886 * 11 9 7 21 21 H 1.08993 * 109.06271 * 43.29798 * 12 11 9 22 22 H 1.08998 * 109.06003 * 162.29315 * 12 11 9 23 23 H 1.08999 * 108.79601 * 182.21268 * 13 12 11 24 24 H 1.09002 * 108.79185 * 300.43989 * 13 12 11 25 25 H 1.00904 * 110.99414 * 153.85797 * 14 13 12 26 26 H 1.08994 * 108.97639 * 217.08721 * 15 14 13 27 27 H 1.08998 * 108.97666 * 335.88809 * 15 14 13 28 28 H 1.09000 * 108.91933 * 79.64231 * 16 15 14 29 29 H 1.09001 * 108.91850 * 198.28511 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 0.4671 -2.5750 -1.1908 11 6 2.2425 -3.6308 0.0027 12 6 1.6531 -4.8156 -0.7950 13 6 0.6565 -5.5433 -0.0172 14 7 -0.5014 -4.7064 0.3619 15 6 -0.1819 -3.9542 1.5508 16 6 0.3011 -2.5294 1.2190 17 1 -0.4850 0.8401 -0.0004 18 1 -0.1988 -1.8783 -1.2688 19 1 2.4392 -3.9430 1.0284 20 1 3.1714 -3.3028 -0.4637 21 1 1.1870 -4.4358 -1.7041 22 1 2.4586 -5.4978 -1.0665 23 1 0.3008 -6.3891 -0.6056 24 1 1.1274 -5.9227 0.8897 25 1 -1.3255 -5.2716 0.5020 26 1 -1.0703 -3.8901 2.1790 27 1 0.6031 -4.4747 2.0993 28 1 -0.5653 -1.9028 1.0072 29 1 0.8269 -2.1242 2.0836 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157409979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -48.882826 kcal Electronic energy + Delta-G solvation = -12322.524758 eV Core-core repulsion = 10245.448690 eV Total energy + Delta-G solvation = -2077.076068 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.21470 -34.81932 -32.08007 -31.48899 -30.00610 -25.98271 -24.51110 -22.38718 -19.78030 -18.36835 -16.94538 -15.66236 -15.15732 -14.30042 -13.80800 -13.39642 -13.05485 -12.47431 -12.17436 -11.66150 -11.34338 -11.10999 -10.82192 -10.38668 -10.35367 -10.18303 -9.76422 -9.64759 -9.27779 -8.91233 -8.41159 -7.81864 -7.45367 -5.99570 -4.10572 3.28844 3.37311 3.41779 4.42834 4.91987 5.23262 5.56445 5.83601 5.96505 6.17113 6.22202 6.37409 6.42846 6.56324 6.71592 6.81875 6.94056 7.04170 7.39365 7.48886 7.76105 7.84329 7.94636 8.15180 8.25359 8.44144 8.92981 9.58074 9.91843 11.01656 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.066314 B = 0.014337 C = 0.013307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.130651 B = 1952.562999 C = 2103.586615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.261 3.739 10 O -0.574 6.574 11 C -0.090 4.090 12 C -0.117 4.117 13 C 0.075 3.925 14 N -0.661 5.661 15 C 0.060 3.940 16 C -0.121 4.121 17 H 0.262 0.738 18 H 0.369 0.631 19 H 0.041 0.959 20 H 0.052 0.948 21 H 0.090 0.910 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.016 0.984 25 H 0.325 0.675 26 H 0.039 0.961 27 H 0.018 0.982 28 H 0.087 0.913 29 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -6.696 1.709 6.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.073 0.927 9 C 0.221 3.779 10 O -0.381 6.381 11 C -0.128 4.128 12 C -0.155 4.155 13 C -0.053 4.053 14 N -0.290 5.290 15 C -0.070 4.070 16 C -0.160 4.160 17 H 0.072 0.928 18 H 0.218 0.782 19 H 0.060 0.940 20 H 0.071 0.929 21 H 0.109 0.891 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.141 0.859 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.105 0.895 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.191 -6.577 1.170 6.683 hybrid contribution 0.120 0.852 1.005 1.323 sum 0.311 -5.726 2.176 6.133 Atomic orbital electron populations 1.69719 1.05744 1.26626 1.51462 1.25011 0.94937 0.99138 0.94190 0.86541 0.80179 0.83717 0.77500 1.19916 1.20976 1.21113 1.22108 0.93421 0.91819 1.50277 0.92701 1.18123 0.86762 0.90738 0.82293 1.86153 1.53098 1.55495 1.43404 1.21334 0.98532 0.95259 0.97660 1.20414 0.96595 0.96647 1.01842 1.20725 0.92454 0.94351 0.97818 1.59845 1.04636 1.27752 1.36735 1.21918 0.97634 0.97547 0.89911 1.22660 1.01877 0.92231 0.99200 0.92784 0.78242 0.93997 0.92945 0.89145 0.94241 0.93248 0.96632 0.85896 0.94195 0.96334 0.89481 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 9.73 55.43 0.54 -24.12 15 2 C 0.07 1.87 5.19 -17.82 -0.09 1.78 15 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.54 -14.98 7.98 -34.44 -0.27 -15.26 15 8 H 0.05 1.54 7.44 -52.49 -0.39 1.15 15 9 C 0.26 6.63 0.63 -92.29 -0.06 6.57 15 10 O -0.57 -15.19 9.89 -35.23 -0.35 -15.54 15 11 C -0.09 -2.04 5.02 -27.21 -0.14 -2.17 15 12 C -0.12 -2.32 5.35 -29.31 -0.16 -2.48 15 13 C 0.08 1.33 5.80 -6.70 -0.04 1.29 15 14 N -0.66 -12.47 5.81 -118.14 -0.69 -13.16 15 15 C 0.06 1.19 5.89 -4.67 -0.03 1.16 15 16 C -0.12 -2.91 4.52 -25.43 -0.11 -3.03 15 17 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 18 H 0.37 10.25 7.09 45.56 0.32 10.57 15 19 H 0.04 0.90 7.15 -51.93 -0.37 0.53 15 20 H 0.05 1.20 7.50 -51.93 -0.39 0.81 15 21 H 0.09 2.01 6.40 -51.93 -0.33 1.68 15 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.02 0.26 7.24 -51.93 -0.38 -0.11 15 25 H 0.33 5.18 8.89 -39.29 -0.35 4.83 15 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.02 0.36 6.50 -51.93 -0.34 0.02 15 28 H 0.09 2.30 6.32 -51.93 -0.33 1.97 15 29 H 0.04 1.01 7.98 -51.93 -0.41 0.59 15 LS Contribution 221.92 15.07 3.34 3.34 Total: -1.00 -28.21 221.92 -6.44 -34.66 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -3.37 Total: 10.61 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.90 Total: -12.14 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.15 Total: -37.28 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.35 Total: -15.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.21 -6.44 -34.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157409979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.227 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds