Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00360 * 2 1 4 4 H 1.48500 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47199 * 299.99556 * 3 2 1 6 6 H 1.48505 * 109.47326 * 59.99812 * 3 2 1 7 7 C 1.37884 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99717 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00141 * 359.97438 * 7 2 1 10 10 O 1.42903 * 108.63477 * 61.75273 * 9 7 2 11 11 C 1.50460 * 108.77150 * 180.02562 * 9 7 2 12 12 C 1.54510 * 108.96139 * 213.13655 * 11 9 7 13 13 C 1.45871 * 111.58445 * 282.75776 * 12 11 9 14 14 N 1.47803 * 112.92074 * 61.32310 * 13 12 11 15 15 C 1.44271 * 109.45883 * 276.72658 * 14 13 12 16 16 C 1.54066 * 111.97379 * 96.44465 * 15 14 13 17 17 H 0.97007 * 120.00106 * 0.02562 * 1 2 3 18 18 H 0.96695 * 114.00682 * 298.24733 * 10 9 7 19 19 H 1.09002 * 109.57372 * 93.25745 * 11 9 7 20 20 H 1.08998 * 109.57079 * 333.00886 * 11 9 7 21 21 H 1.08993 * 109.06271 * 43.29798 * 12 11 9 22 22 H 1.08998 * 109.06003 * 162.29315 * 12 11 9 23 23 H 1.08999 * 108.79601 * 182.21268 * 13 12 11 24 24 H 1.09002 * 108.79185 * 300.43989 * 13 12 11 25 25 H 1.00904 * 110.99414 * 153.85797 * 14 13 12 26 26 H 1.08994 * 108.97639 * 217.08721 * 15 14 13 27 27 H 1.08998 * 108.97666 * 335.88809 * 15 14 13 28 28 H 1.09000 * 108.91933 * 79.64231 * 16 15 14 29 29 H 1.09001 * 108.91850 * 198.28511 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 0.4671 -2.5750 -1.1908 11 6 2.2425 -3.6308 0.0027 12 6 1.6531 -4.8156 -0.7950 13 6 0.6565 -5.5433 -0.0172 14 7 -0.5014 -4.7064 0.3619 15 6 -0.1819 -3.9542 1.5508 16 6 0.3011 -2.5294 1.2190 17 1 -0.4850 0.8401 -0.0004 18 1 -0.1988 -1.8783 -1.2688 19 1 2.4392 -3.9430 1.0284 20 1 3.1714 -3.3028 -0.4637 21 1 1.1870 -4.4358 -1.7041 22 1 2.4586 -5.4978 -1.0665 23 1 0.3008 -6.3891 -0.6056 24 1 1.1274 -5.9227 0.8897 25 1 -1.3255 -5.2716 0.5020 26 1 -1.0703 -3.8901 2.1790 27 1 0.6031 -4.4747 2.0993 28 1 -0.5653 -1.9028 1.0072 29 1 0.8269 -2.1242 2.0836 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157409979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -69.937216 kcal Electronic energy + Delta-G solvation = -12323.437745 eV Core-core repulsion = 10245.448690 eV Total energy + Delta-G solvation = -2077.989055 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.94022 -36.62470 -34.07039 -33.24102 -31.87486 -27.91653 -26.24916 -24.17874 -21.33193 -20.26708 -18.93543 -17.27498 -17.08864 -16.11548 -15.66988 -14.98916 -14.90420 -14.18324 -13.96314 -13.37101 -13.28036 -12.97323 -12.66306 -12.34645 -12.25142 -11.80700 -11.59677 -11.36977 -11.06919 -10.84241 -10.46443 -9.74252 -9.05178 -8.07192 -6.27122 1.37698 1.40796 1.51111 2.41818 3.11148 3.50802 4.12309 4.29531 4.44495 4.50218 4.58942 4.68166 4.82482 4.87288 5.05937 5.16203 5.18555 5.24531 5.59147 5.65911 5.69157 5.99198 6.22704 6.34957 6.42921 6.81270 6.86413 7.44573 7.76411 8.90757 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.066314 B = 0.014337 C = 0.013307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.130651 B = 1952.562999 C = 2103.586615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.569 4.569 8 H 0.042 0.958 9 C 0.251 3.749 10 O -0.575 6.575 11 C -0.092 4.092 12 C -0.110 4.110 13 C 0.072 3.928 14 N -0.678 5.678 15 C 0.069 3.931 16 C -0.114 4.114 17 H 0.264 0.736 18 H 0.358 0.642 19 H 0.051 0.949 20 H 0.038 0.962 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.345 0.655 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -7.703 2.018 7.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.607 4.607 8 H 0.061 0.939 9 C 0.211 3.789 10 O -0.381 6.381 11 C -0.130 4.130 12 C -0.148 4.148 13 C -0.056 4.056 14 N -0.309 5.309 15 C -0.061 4.061 16 C -0.154 4.154 17 H 0.074 0.926 18 H 0.205 0.795 19 H 0.070 0.930 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.049 0.951 25 H 0.164 0.836 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.220 -7.607 1.481 7.753 hybrid contribution 0.113 1.177 0.885 1.477 sum 0.333 -6.430 2.366 6.860 Atomic orbital electron populations 1.69825 1.06547 1.27331 1.51102 1.25670 0.95815 1.01951 0.93784 0.85624 0.78867 0.80069 0.77667 1.19985 1.20551 1.20395 1.22425 0.93165 0.93723 1.51386 0.93929 1.18327 0.87238 0.90985 0.82332 1.86180 1.52856 1.54810 1.44245 1.21305 0.97299 0.95669 0.98695 1.20381 0.97927 0.96098 1.00403 1.20747 0.91698 0.94541 0.98620 1.59662 1.06080 1.28869 1.36330 1.21704 0.98699 0.95050 0.90683 1.22485 1.00176 0.94919 0.97789 0.92619 0.79475 0.93024 0.94268 0.91891 0.91376 0.90280 0.95065 0.83646 0.92351 0.95193 0.92266 0.95934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.54 9.73 21.45 0.21 -50.33 15 2 C 0.03 1.52 5.19 84.66 0.44 1.96 15 3 Si 0.95 44.06 29.54 68.60 2.03 46.08 15 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.57 -32.18 7.98 25.60 0.20 -31.97 15 8 H 0.04 2.44 7.44 -2.91 -0.02 2.42 15 9 C 0.25 12.81 0.63 -11.88 -0.01 12.80 15 10 O -0.57 -30.71 9.89 -148.98 -1.47 -32.18 15 11 C -0.09 -4.08 5.02 30.29 0.15 -3.93 15 12 C -0.11 -4.13 5.35 28.92 0.15 -3.98 15 13 C 0.07 2.31 5.80 83.94 0.49 2.80 15 14 N -0.68 -23.87 5.81 -527.70 -3.07 -26.94 15 15 C 0.07 2.61 5.89 87.15 0.51 3.12 15 16 C -0.11 -5.52 4.52 31.44 0.14 -5.38 15 17 H 0.26 14.01 8.31 -92.70 -0.77 13.24 15 18 H 0.36 20.33 7.09 -74.06 -0.52 19.80 15 19 H 0.05 2.15 7.15 -2.39 -0.02 2.13 15 20 H 0.04 1.79 7.50 -2.39 -0.02 1.77 15 21 H 0.06 2.72 6.40 -2.39 -0.02 2.70 15 22 H 0.07 2.14 8.14 -2.39 -0.02 2.13 15 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.03 0.93 7.24 -2.39 -0.02 0.91 15 25 H 0.35 9.88 8.89 -89.69 -0.80 9.08 15 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 27 H 0.03 1.07 6.50 -2.39 -0.02 1.05 15 28 H 0.06 3.16 6.32 -2.39 -0.02 3.15 15 29 H 0.02 1.11 7.98 -2.39 -0.02 1.10 15 Total: -1.00 -59.84 221.92 -0.39 -60.23 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.17 Total: 27.72 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 2.09 Total: -24.58 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.86 Total: -77.27 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.47 Total: -32.18 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -59.84 -0.39 -60.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157409979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.709 kcal (2) G-P(sol) polarization free energy of solvation -59.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds