Wall clock time and date at job start Mon Mar 30 2020 02:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00298 * 2 1 4 4 H 1.48501 * 109.47283 * 274.99026 * 3 2 1 5 5 H 1.48503 * 109.46879 * 34.98573 * 3 2 1 6 6 H 1.48498 * 109.47381 * 154.98746 * 3 2 1 7 7 C 1.38816 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99533 * 186.84011 * 7 2 1 9 9 N 1.36932 * 120.00432 * 6.83687 * 7 2 1 10 10 C 1.47430 * 125.64879 * 173.92966 * 9 7 2 11 11 C 1.54906 * 104.82878 * 155.89684 * 10 9 7 12 12 C 1.55156 * 101.58377 * 37.00956 * 11 10 9 13 13 H 1.08994 * 110.71981 * 82.86485 * 12 11 10 14 14 C 1.53005 * 110.87125 * 206.06335 * 12 11 10 15 15 C 1.52998 * 109.46855 * 180.02562 * 14 12 11 16 16 O 1.42900 * 109.46937 * 180.02562 * 15 14 12 17 17 C 1.47023 * 125.64856 * 353.95787 * 9 7 2 18 18 H 0.97001 * 119.99594 * 0.02562 * 1 2 3 19 19 H 1.08994 * 110.36654 * 274.73383 * 10 9 7 20 20 H 1.08999 * 110.36696 * 37.05839 * 10 9 7 21 21 H 1.08998 * 111.00561 * 155.08942 * 11 10 9 22 22 H 1.09006 * 111.00492 * 278.93283 * 11 10 9 23 23 H 1.09006 * 109.47125 * 300.06501 * 14 12 11 24 24 H 1.08996 * 109.46892 * 60.06144 * 14 12 11 25 25 H 1.09001 * 109.47410 * 299.99461 * 15 14 12 26 26 H 1.08999 * 109.47358 * 60.00280 * 15 14 12 27 27 H 0.96701 * 114.00286 * 180.02562 * 16 15 14 28 28 H 1.08998 * 109.88376 * 300.45902 * 17 9 7 29 29 H 1.09005 * 109.87936 * 61.46369 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2056 0.1109 9 7 1.3329 -2.3838 -0.1422 10 6 1.9489 -3.7155 -0.2863 11 6 0.8660 -4.7085 0.2043 12 6 -0.4312 -4.0407 -0.3238 13 1 -0.6004 -4.2998 -1.3688 14 6 -1.6359 -4.4375 0.5321 15 6 -2.8951 -3.7632 -0.0162 16 8 -4.0201 -4.1332 0.7835 17 6 -0.1292 -2.5346 -0.1765 18 1 -0.4849 0.8401 -0.0004 19 1 2.1955 -3.9084 -1.3303 20 1 2.8413 -3.7898 0.3352 21 1 1.0079 -5.6930 -0.2413 22 1 0.8578 -4.7715 1.2925 23 1 -1.7610 -5.5200 0.5037 24 1 -1.4717 -4.1175 1.5610 25 1 -2.7696 -2.6808 0.0128 26 1 -3.0596 -4.0825 -1.0453 27 1 -4.8551 -3.7416 0.4929 28 1 -0.5625 -2.1584 0.7502 29 1 -0.5385 -1.9873 -1.0257 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161579240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:37 Heat of formation + Delta-G solvation = -39.390095 kcal Electronic energy + Delta-G solvation = -11639.887161 eV Core-core repulsion = 9563.222729 eV Total energy + Delta-G solvation = -2076.664432 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.88337 -36.30176 -33.03903 -31.20508 -28.46198 -26.53027 -24.51239 -21.97884 -20.12587 -19.17640 -17.10815 -16.62891 -15.51675 -14.51081 -14.10623 -13.79309 -13.53874 -12.37740 -12.27000 -11.81006 -11.54053 -11.40992 -10.86400 -10.78971 -10.72990 -10.12673 -9.98627 -9.87051 -9.75736 -9.58523 -9.41289 -8.54584 -6.77113 -5.69066 -3.00439 3.42243 3.47307 3.49369 4.52138 4.55754 5.37253 5.41455 5.49804 5.58052 5.76711 5.84973 5.92478 5.99044 6.22697 6.30776 6.43135 6.52306 6.66875 6.71190 6.81560 7.05180 7.60529 7.67136 7.85897 7.89483 8.30573 9.26306 9.87137 10.54964 11.43436 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.044977 B = 0.012002 C = 0.009731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.387041 B = 2332.337768 C = 2876.598685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.132 3.868 11 C -0.126 4.126 12 C -0.117 4.117 13 H 0.065 0.935 14 C -0.099 4.099 15 C 0.073 3.927 16 O -0.581 6.581 17 C 0.183 3.817 18 H 0.251 0.749 19 H 0.017 0.983 20 H 0.037 0.963 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.374 0.626 28 H 0.044 0.956 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -7.153 -0.858 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.006 3.994 11 C -0.164 4.164 12 C -0.136 4.136 13 H 0.083 0.917 14 C -0.137 4.137 15 C -0.005 4.005 16 O -0.386 6.386 17 C 0.059 3.941 18 H 0.061 0.939 19 H 0.035 0.965 20 H 0.055 0.945 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.219 0.781 28 H 0.062 0.938 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.171 -7.256 -0.516 7.935 hybrid contribution 0.015 1.263 -0.396 1.324 sum -3.156 -5.993 -0.912 6.834 Atomic orbital electron populations 1.69982 1.04918 1.24898 1.57130 1.24819 0.95722 0.97644 1.02377 0.86113 0.78686 0.83640 0.77455 1.21675 1.21802 1.20652 1.19095 0.91120 0.82672 1.42648 0.90464 1.44520 1.01735 1.01294 1.85961 1.21560 0.94664 0.86161 0.96979 1.22749 0.95876 0.97401 1.00395 1.22430 0.93248 0.99870 0.98077 0.91662 1.21407 0.92499 0.99450 1.00327 1.22314 0.85760 0.99604 0.92782 1.86438 1.18735 1.75138 1.58333 1.21231 0.84428 0.87742 1.00747 0.93866 0.96498 0.94463 0.92342 0.91730 0.92413 0.91361 0.92213 0.94271 0.78053 0.93785 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 10.36 55.49 0.57 -26.88 15 2 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 15 3 Si 0.91 22.44 29.56 -169.99 -5.02 17.42 15 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.23 -6.52 10.26 -15.06 -0.15 -6.67 15 8 H 0.08 2.14 7.84 -52.48 -0.41 1.73 15 9 N -0.61 -16.15 3.39 -170.07 -0.58 -16.73 15 10 C 0.13 2.86 7.23 -2.53 -0.02 2.84 15 11 C -0.13 -2.30 6.54 -24.58 -0.16 -2.46 15 12 C -0.12 -2.24 2.97 -88.79 -0.26 -2.51 15 13 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 14 C -0.10 -1.71 4.98 -26.73 -0.13 -1.85 15 15 C 0.07 1.18 6.89 37.16 0.26 1.44 15 16 O -0.58 -8.90 13.66 -35.23 -0.48 -9.38 15 17 C 0.18 4.53 4.13 -3.07 -0.01 4.51 15 18 H 0.25 7.24 8.31 -40.82 -0.34 6.90 15 19 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 20 H 0.04 0.78 8.14 -51.93 -0.42 0.35 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.06 1.17 8.05 -51.93 -0.42 0.76 15 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.07 1.27 8.06 -51.93 -0.42 0.85 15 25 H 0.06 1.08 7.49 -51.93 -0.39 0.69 15 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 27 H 0.37 3.85 9.12 45.56 0.42 4.27 15 28 H 0.04 1.20 7.16 -51.93 -0.37 0.83 15 29 H 0.04 1.15 7.36 -51.93 -0.38 0.76 15 LS Contribution 239.03 15.07 3.60 3.60 Total: -1.00 -31.79 239.03 -6.14 -37.93 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -3.65 Total: -0.91 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.58 Total: -5.06 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.00 Total: -43.61 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.48 Total: -9.38 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.79 -6.14 -37.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161579240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.461 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds