Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 O 1.42896 * 109.46977 * 299.99762 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 N 1.29026 * 124.91796 * 255.00174 * 12 9 7 14 14 C 1.31781 * 117.12253 * 179.97438 * 13 12 9 15 15 C 1.33642 * 114.50271 * 359.97438 * 14 13 12 16 16 S 1.70983 * 124.91223 * 74.69542 * 12 9 7 17 17 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 18 18 H 0.96699 * 114.00348 * 300.00156 * 11 9 7 19 19 H 1.08005 * 122.74769 * 180.02562 * 14 13 12 20 20 H 1.08004 * 126.03645 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0005 13 7 2.5023 -4.3838 -1.0214 14 6 3.3863 -5.3458 -0.8489 15 6 3.8885 -5.4219 0.3873 16 16 3.1477 -4.1478 1.3529 17 1 -0.4850 -0.8401 -0.0004 18 1 0.9209 -2.5290 1.9984 19 1 3.6814 -6.0171 -1.6418 20 1 4.6212 -6.1363 0.7325 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161770116.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = -38.243163 kcal Electronic energy + Delta-G solvation = -9143.653725 eV Core-core repulsion = 7238.125709 eV Total energy + Delta-G solvation = -1905.528016 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.58224 -38.09967 -34.44174 -31.83164 -28.87707 -26.15610 -24.09128 -21.04877 -19.62211 -19.20102 -17.32343 -16.16382 -15.66870 -15.60538 -15.42074 -14.83844 -14.10610 -13.94971 -12.63858 -12.50124 -12.36754 -12.00598 -11.91766 -10.75926 -10.71382 -10.47517 -10.25293 -9.75323 -8.70927 -6.59176 -0.19323 0.47528 0.88849 1.54468 1.61662 1.82225 1.92413 2.53364 3.04836 3.36867 3.83984 4.26443 4.39049 4.55647 5.00382 5.27050 5.59671 5.97669 6.43320 6.81309 6.91802 7.34523 8.66189 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.062516 B = 0.013211 C = 0.012601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.778128 B = 2118.880695 C = 2221.430529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.008 4.008 3 Si 1.119 2.881 4 H -0.281 1.281 5 H -0.262 1.262 6 H -0.274 1.274 7 C -0.649 4.649 8 H 0.052 0.948 9 C 0.280 3.720 10 H 0.044 0.956 11 O -0.576 6.576 12 C 0.033 3.967 13 N -0.523 5.523 14 C 0.017 3.983 15 C -0.261 4.261 16 S 0.143 5.857 17 H 0.269 0.731 18 H 0.367 0.633 19 H 0.202 0.798 20 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.731 -7.492 3.381 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.211 4.211 3 Si 0.939 3.061 4 H -0.206 1.206 5 H -0.187 1.187 6 H -0.199 1.199 7 C -0.687 4.687 8 H 0.070 0.930 9 C 0.219 3.781 10 H 0.061 0.939 11 O -0.381 6.381 12 C -0.244 4.244 13 N -0.240 5.240 14 C -0.133 4.133 15 C -0.400 4.400 16 S 0.396 5.604 17 H 0.080 0.920 18 H 0.214 0.786 19 H 0.219 0.781 20 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.847 -5.501 3.473 10.193 hybrid contribution 0.562 -2.331 -0.626 2.478 sum 8.408 -7.832 2.847 11.838 Atomic orbital electron populations 1.70784 1.07935 1.31379 1.44305 1.27398 0.96386 1.06265 0.91062 0.82937 0.74164 0.70857 0.78146 1.20599 1.18717 1.19910 1.22512 0.94460 0.92069 1.59678 0.92991 1.17946 0.86388 0.88001 0.85722 0.93858 1.86539 1.38964 1.96295 1.16327 1.28311 1.02470 1.00570 0.93098 1.66261 1.18601 1.07337 1.31751 1.22319 0.95287 0.97390 0.98354 1.27478 1.09715 1.05680 0.97105 1.83487 1.35067 1.25588 1.16221 0.92042 0.78568 0.78116 0.76593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.39 13.53 21.45 0.29 -55.10 14 2 C -0.01 -0.44 5.40 84.65 0.46 0.02 14 3 Si 1.12 48.78 29.90 68.60 2.05 50.83 14 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 14 5 H -0.26 -10.42 7.11 99.48 0.71 -9.71 14 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 14 7 C -0.65 -36.29 8.75 25.60 0.22 -36.07 14 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 14 9 C 0.28 14.94 2.95 29.10 0.09 15.03 14 10 H 0.04 2.61 8.01 -2.39 -0.02 2.59 14 11 O -0.58 -29.49 11.98 -148.98 -1.78 -31.27 14 12 C 0.03 1.48 6.28 88.52 0.56 2.04 14 13 N -0.52 -22.89 10.54 -191.43 -2.02 -24.91 14 14 C 0.02 0.54 11.35 83.66 0.95 1.49 14 15 C -0.26 -7.24 11.37 66.78 0.76 -6.48 14 16 S 0.14 4.92 22.55 -56.49 -1.27 3.64 14 17 H 0.27 16.93 6.47 -92.70 -0.60 16.33 14 18 H 0.37 16.40 8.47 -74.06 -0.63 15.77 14 19 H 0.20 4.90 8.06 -2.91 -0.02 4.87 14 20 H 0.22 3.82 8.06 -2.91 -0.02 3.80 14 Total: -1.00 -67.50 202.72 1.10 -66.40 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.80 Total: 14.39 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 3.03 Total: -23.97 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.73 Total: -80.01 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.78 Total: -31.27 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.27 Total: 3.64 kcal Total: -67.50 1.10 -66.40 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161770116.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.153 kcal (2) G-P(sol) polarization free energy of solvation -67.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds