Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48498 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47343 * 299.99613 * 3 2 1 6 6 H 1.48506 * 109.47111 * 59.99542 * 3 2 1 7 7 C 1.40047 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99754 * 197.17521 * 7 2 1 9 9 C 1.41392 * 120.00209 * 17.18978 * 7 2 1 10 10 C 1.40997 * 121.03117 * 23.28672 * 9 7 2 11 11 C 1.37933 * 118.87490 * 179.73531 * 10 9 7 12 12 F 1.35104 * 119.48661 * 180.23214 * 11 10 9 13 13 N 1.32223 * 121.03156 * 0.24783 * 11 10 9 14 14 C 1.31988 * 122.32947 * 0.02562 * 13 11 10 15 15 C 1.38044 * 120.98554 * 0.02562 * 14 13 11 16 16 F 1.35097 * 120.58021 * 179.97438 * 15 14 13 17 17 H 0.97001 * 120.00329 * 0.02562 * 1 2 3 18 18 H 1.08005 * 120.56488 * 0.02562 * 10 9 7 19 19 H 1.07995 * 119.51181 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0077 -1.2129 0.0005 8 1 3.0516 -1.2336 0.2768 9 6 1.3481 -2.4102 -0.3608 10 6 0.1917 -2.3881 -1.1671 11 6 -0.4130 -3.5831 -1.4973 12 9 -1.5191 -3.5766 -2.2732 13 7 0.0726 -4.7348 -1.0661 14 6 1.1487 -4.8064 -0.3051 15 6 1.8239 -3.6657 0.0802 16 9 2.9242 -3.7486 0.8597 17 1 -0.4851 0.8400 -0.0004 18 1 -0.2112 -1.4517 -1.5242 19 1 1.5062 -5.7719 0.0211 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213697595.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = -90.125912 kcal Electronic energy + Delta-G solvation = -10717.743695 eV Core-core repulsion = 8256.125488 eV Total energy + Delta-G solvation = -2461.618207 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 185.035 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -49.74592 -49.32421 -40.03267 -36.31363 -32.80801 -30.85455 -28.26773 -24.30546 -23.40878 -19.97226 -18.40771 -18.07140 -17.89644 -16.87285 -16.57324 -16.00536 -15.26501 -15.13162 -14.60148 -14.01208 -13.74316 -13.37345 -13.18921 -12.79773 -12.54322 -12.00369 -11.41723 -10.40438 -10.25769 -9.49074 -8.92992 -6.83540 0.33539 0.59920 1.37372 1.47012 1.55703 2.11788 2.45439 3.00169 3.22280 3.72444 4.07401 4.43685 4.60546 4.95309 4.97108 5.24308 5.58433 5.81511 6.21738 6.42862 6.47404 7.08861 8.00723 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.043228 B = 0.016382 C = 0.012248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.579154 B = 1708.797157 C = 2285.610696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.037 3.963 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.257 1.257 6 H -0.259 1.259 7 C -0.453 4.453 8 H 0.095 0.905 9 C 0.089 3.911 10 C -0.239 4.239 11 C 0.276 3.724 12 F -0.136 7.136 13 N -0.599 5.599 14 C 0.124 3.876 15 C -0.102 4.102 16 F -0.150 7.150 17 H 0.304 0.696 18 H 0.136 0.864 19 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 2.207 -0.085 3.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.817 3.183 4 H -0.177 1.177 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.482 4.482 8 H 0.113 0.887 9 C 0.081 3.919 10 C -0.263 4.263 11 C 0.129 3.871 12 F -0.115 7.115 13 N -0.320 5.320 14 C -0.031 4.031 15 C -0.126 4.126 16 F -0.129 7.129 17 H 0.115 0.885 18 H 0.154 0.846 19 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.841 1.574 -0.333 2.444 hybrid contribution 0.401 1.209 0.230 1.294 sum 2.242 2.782 -0.103 3.574 Atomic orbital electron populations 1.69761 1.09485 1.32422 1.29967 1.27062 0.95619 1.05314 0.90343 0.84900 0.79354 0.74465 0.79611 1.17697 1.18104 1.18332 1.20008 0.98779 0.91346 1.38054 0.88735 1.18028 0.91481 0.92717 0.89661 1.21681 1.01677 0.96829 1.06155 1.18104 0.85121 0.90969 0.92939 1.91453 1.50418 1.97187 1.72439 1.66784 1.17162 1.27660 1.20391 1.22202 0.89820 0.97636 0.93413 1.18939 0.92505 0.95817 1.05352 1.91287 1.51345 1.96999 1.73260 0.88482 0.84607 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.68 10.91 21.84 0.24 -37.44 13 2 C 0.04 1.70 5.20 85.29 0.44 2.14 13 3 Si 1.00 33.85 29.59 68.60 2.03 35.88 13 4 H -0.25 -8.49 7.11 99.48 0.71 -7.78 13 5 H -0.26 -8.28 7.11 99.48 0.71 -7.57 13 6 H -0.26 -8.34 7.11 99.48 0.71 -7.64 13 7 C -0.45 -22.77 8.87 23.49 0.21 -22.56 13 8 H 0.09 4.60 7.79 -2.91 -0.02 4.58 13 9 C 0.09 4.68 5.61 -21.07 -0.12 4.56 13 10 C -0.24 -12.41 8.76 22.87 0.20 -12.21 13 11 C 0.28 13.86 8.39 84.56 0.71 14.57 13 12 F -0.14 -6.43 17.28 44.97 0.78 -5.65 13 13 N -0.60 -29.05 10.34 -197.30 -2.04 -31.09 13 14 C 0.12 5.53 11.16 84.62 0.94 6.47 13 15 C -0.10 -4.96 7.36 22.98 0.17 -4.79 13 16 F -0.15 -6.97 16.83 44.97 0.76 -6.22 13 17 H 0.30 12.64 8.29 -92.71 -0.77 11.87 13 18 H 0.14 7.13 6.17 -2.91 -0.02 7.11 13 19 H 0.18 6.48 8.06 -2.91 -0.02 6.46 13 Total: -1.00 -54.93 191.94 5.61 -49.32 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.29 Total: 7.03 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 2.56 Total: -11.82 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.80 Total: -68.54 kcal Atomic # 9 Polarization: -13.40 SS G_CDS: 1.53 Total: -11.87 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Total: -54.93 5.61 -49.32 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213697595.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.806 kcal (2) G-P(sol) polarization free energy of solvation -54.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds