Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35543 * 124.84899 * 2 1 4 4 C 1.39296 * 107.86184 * 179.83415 * 3 2 1 5 5 C 1.41327 * 127.08787 * 180.15217 * 4 3 2 6 6 H 1.08007 * 120.00129 * 0.28145 * 5 4 3 7 7 C 1.39659 * 120.00655 * 180.28198 * 5 4 3 8 8 N 1.31068 * 119.99836 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00647 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46800 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47141 * 119.99644 * 9 7 5 12 12 H 1.48497 * 109.47015 * 239.99714 * 9 7 5 13 13 C 1.46951 * 105.82964 * 0.40928 * 4 3 2 14 14 C 1.34448 * 106.59305 * 359.74252 * 13 4 3 15 15 Cl 1.73605 * 125.29344 * 180.02562 * 14 13 4 16 16 H 1.09002 * 109.47391 * 269.72582 * 1 2 3 17 17 H 1.09001 * 109.46813 * 149.72638 * 1 2 3 18 18 H 1.09004 * 109.47041 * 29.72765 * 1 2 3 19 19 H 1.08000 * 126.06899 * 359.97438 * 3 2 1 20 20 H 0.96991 * 120.00715 * 180.02562 * 8 7 5 21 21 H 1.08004 * 126.69892 * 179.73609 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2395 1.1123 0.0000 4 6 3.5717 0.7054 0.0038 5 6 4.7161 1.5346 0.0082 6 1 4.6046 2.6089 0.0134 7 6 5.9913 0.9650 0.0057 8 7 6.1267 -0.3386 -0.0001 9 14 7.5040 2.0611 0.0122 10 1 7.0832 3.4852 0.0189 11 1 8.3150 1.7783 1.2236 12 1 8.3161 1.7910 -1.2013 13 6 3.5420 -0.7638 -0.0039 14 6 2.2461 -1.1217 -0.0057 15 17 1.6564 -2.7545 -0.0137 16 1 -0.3634 -0.0049 1.0276 17 1 -0.3633 -0.8875 -0.5181 18 1 -0.3633 0.8925 -0.5096 19 1 1.8864 2.1330 -0.0004 20 1 7.0122 -0.7343 -0.0014 21 1 4.3948 -1.4266 -0.0075 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213707913.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = 16.391220 kcal Electronic energy + Delta-G solvation = -9070.400233 eV Core-core repulsion = 7165.197636 eV Total energy + Delta-G solvation = -1905.202597 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.030 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.97333 -37.30986 -35.49215 -32.77407 -29.85451 -27.73683 -25.64811 -21.33315 -20.42742 -18.94779 -17.26148 -16.31952 -15.89199 -15.01632 -14.42455 -14.06499 -13.40327 -13.28726 -12.91767 -12.82670 -12.64524 -12.22238 -12.15991 -11.72743 -11.31160 -11.07922 -9.04518 -8.64910 -8.29194 -5.99788 1.12185 1.35189 1.45455 1.60047 1.66473 2.35390 2.37889 2.72136 3.62366 4.19069 4.51272 4.67929 4.68925 5.32546 5.36372 5.48098 5.84588 6.22664 6.40231 6.81700 6.93673 7.22337 7.27801 8.68339 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.067742 B = 0.012242 C = 0.010427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.231108 B = 2286.651413 C = 2684.737593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.456 5.456 3 C -0.159 4.159 4 C -0.004 4.004 5 C -0.477 4.477 6 H 0.070 0.930 7 C 0.020 3.980 8 N -0.859 5.859 9 Si 0.985 3.015 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.272 1.272 13 C -0.210 4.210 14 C 0.034 3.966 15 Cl -0.045 7.045 16 H 0.072 0.928 17 H 0.081 0.919 18 H 0.095 0.905 19 H 0.163 0.837 20 H 0.275 0.725 21 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -0.411 -0.087 6.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.139 5.139 3 C -0.284 4.284 4 C -0.010 4.010 5 C -0.510 4.510 6 H 0.088 0.912 7 C -0.188 4.188 8 N -0.489 5.489 9 Si 0.808 3.192 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.197 1.197 13 C -0.240 4.240 14 C -0.102 4.102 15 Cl -0.017 7.017 16 H 0.091 0.909 17 H 0.100 0.900 18 H 0.114 0.886 19 H 0.180 0.820 20 H 0.085 0.915 21 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.775 -0.688 -0.086 6.811 hybrid contribution 0.609 0.067 0.016 0.613 sum -6.166 -0.621 -0.070 6.198 Atomic orbital electron populations 1.22039 0.76660 1.04615 1.03293 1.43201 1.06330 1.03478 1.60912 1.21959 0.89708 0.89822 1.26958 1.18850 0.92068 0.91647 0.98448 1.19042 0.90586 0.93644 1.47732 0.91187 1.26595 1.03105 0.96526 0.92600 1.69885 1.24915 1.12207 1.41909 0.85105 0.76981 0.78889 0.78252 1.18347 1.19708 1.19702 1.22393 0.92722 0.96298 1.12572 1.20783 0.90321 0.80330 1.18787 1.98246 1.89214 1.16311 1.97906 0.90918 0.90040 0.88633 0.82009 0.91477 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.24 10.86 127.77 1.39 3.62 14 2 N -0.46 -19.69 3.11 -533.53 -1.66 -21.35 14 3 C -0.16 -7.71 11.47 84.37 0.97 -6.74 14 4 C 0.00 -0.21 6.09 -19.98 -0.12 -0.33 14 5 C -0.48 -27.25 9.40 23.37 0.22 -27.03 14 6 H 0.07 3.81 7.84 -2.91 -0.02 3.79 14 7 C 0.02 1.10 5.49 85.15 0.47 1.57 14 8 N -0.86 -48.39 10.42 21.79 0.23 -48.17 14 9 Si 0.99 41.38 29.56 68.60 2.03 43.40 14 10 H -0.26 -10.51 7.11 99.48 0.71 -9.80 14 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 14 12 H -0.27 -11.02 7.11 99.48 0.71 -10.32 14 13 C -0.21 -11.65 9.83 23.69 0.23 -11.42 14 14 C 0.03 1.59 7.34 83.07 0.61 2.20 14 15 Cl -0.04 -1.70 28.56 -2.72 -0.08 -1.77 14 16 H 0.07 1.93 8.14 -2.39 -0.02 1.91 14 17 H 0.08 2.20 7.67 -2.39 -0.02 2.18 14 18 H 0.10 2.39 8.13 -2.38 -0.02 2.37 14 19 H 0.16 6.91 8.06 -2.91 -0.02 6.89 14 20 H 0.28 14.18 8.30 -92.72 -0.77 13.41 14 21 H 0.14 8.32 6.02 -2.91 -0.02 8.30 14 Total: -1.00 -63.10 207.61 5.51 -57.59 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.23 Total: 8.41 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 3.76 Total: -38.12 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.43 Total: -69.52 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.77 kcal Total: -63.10 5.51 -57.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213707913.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.984 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds