Wall clock time and date at job start Mon Mar 30 2020 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.52608 * 60.12812 * 9 7 2 11 11 C 1.53124 * 109.52558 * 299.99906 * 9 7 2 12 12 C 1.53035 * 109.28024 * 182.43957 * 11 9 7 13 13 N 1.46848 * 109.52130 * 59.18359 * 12 11 9 14 14 C 1.46850 * 111.19667 * 298.25573 * 13 12 11 15 15 C 1.53041 * 109.52235 * 61.74364 * 14 13 12 16 16 H 1.08993 * 109.50424 * 60.76344 * 15 14 13 17 17 C 1.52999 * 109.49839 * 180.87998 * 15 14 13 18 18 O 1.42897 * 109.47124 * 294.80001 * 17 15 14 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.50471 * 302.38750 * 11 9 7 21 21 H 1.08999 * 109.49790 * 62.50094 * 11 9 7 22 22 H 1.08998 * 109.45895 * 179.19686 * 12 11 9 23 23 H 1.08995 * 109.46348 * 299.17593 * 12 11 9 24 24 H 1.00897 * 111.00157 * 62.35345 * 13 12 11 25 25 H 1.08997 * 109.46216 * 181.75988 * 14 13 12 26 26 H 1.09000 * 109.46192 * 301.73930 * 14 13 12 27 27 H 1.09000 * 109.47768 * 54.80531 * 17 15 14 28 28 H 1.09005 * 109.46829 * 174.80277 * 17 15 14 29 29 H 0.96702 * 113.99908 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6255 -2.5586 -0.8911 11 6 0.3707 -2.5818 1.2496 12 6 -0.3451 -3.9342 1.2751 13 7 0.6487 -5.0154 1.2820 14 6 1.4749 -4.9849 0.0683 15 6 2.2450 -3.6639 0.0069 16 1 2.8959 -3.5813 0.8772 17 6 3.0887 -3.6235 -1.2688 18 8 4.0925 -4.6387 -1.2083 19 1 -0.4850 0.8401 0.0004 20 1 0.9922 -2.4822 2.1395 21 1 -0.3671 -1.7799 1.2287 22 1 -0.9617 -4.0019 2.1713 23 1 -0.9768 -4.0274 0.3917 24 1 1.2223 -4.9740 2.1110 25 1 2.1800 -5.8158 0.0881 26 1 0.8344 -5.0730 -0.8093 27 1 2.4484 -3.7967 -2.1337 28 1 3.5646 -2.6469 -1.3588 29 1 4.6664 -4.6713 -1.9860 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215148992.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:01 Heat of formation + Delta-G solvation = -90.983925 kcal Electronic energy + Delta-G solvation = -11921.447737 eV Core-core repulsion = 9842.546028 eV Total energy + Delta-G solvation = -2078.901709 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.99580 -37.29482 -35.16709 -32.78136 -31.53914 -27.48744 -26.15655 -23.65686 -22.27370 -20.89160 -18.53755 -18.08113 -16.88528 -16.36659 -15.91700 -15.23259 -14.94636 -14.61910 -14.07055 -13.73691 -13.24404 -12.97825 -12.74556 -12.59738 -12.41701 -12.08025 -11.84902 -11.38537 -11.20561 -10.80939 -10.75454 -10.49153 -9.16871 -8.08306 -6.24431 1.39214 1.39948 1.47441 2.40497 3.14763 3.47486 3.59072 4.05377 4.28221 4.32626 4.49028 4.66271 4.74436 4.79313 4.88756 5.02809 5.10831 5.27068 5.32907 5.42127 5.59546 5.92019 5.95230 6.23435 6.34411 6.55818 6.85399 6.98134 7.43336 8.92945 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.015486 C = 0.011665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.462795 B = 1807.685953 C = 2399.664535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.057 3.943 10 H -0.003 1.003 11 C -0.136 4.136 12 C 0.062 3.938 13 N -0.683 5.683 14 C 0.074 3.926 15 C -0.106 4.106 16 H 0.048 0.952 17 C 0.097 3.903 18 O -0.586 6.586 19 H 0.261 0.739 20 H 0.027 0.973 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.340 0.660 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -5.946 -0.789 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.038 3.962 10 H 0.015 0.985 11 C -0.176 4.176 12 C -0.068 4.068 13 N -0.310 5.310 14 C -0.056 4.056 15 C -0.127 4.127 16 H 0.066 0.934 17 C 0.019 3.981 18 O -0.394 6.394 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.157 0.843 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.648 -6.427 -0.467 6.967 hybrid contribution 1.095 2.197 -0.423 2.491 sum 3.743 -4.230 -0.891 5.718 Atomic orbital electron populations 1.69999 1.07049 1.27160 1.51153 1.25698 0.95634 1.02172 0.94890 0.85750 0.78493 0.79522 0.78724 1.20956 1.19998 1.19640 1.21491 0.92810 0.92002 1.50639 0.93120 1.18567 0.92416 0.91641 0.93575 0.98481 1.22108 0.99807 0.97960 0.97739 1.21998 0.94502 0.88801 1.01450 1.60849 1.18822 1.46275 1.05066 1.21934 0.94888 0.95698 0.93033 1.21806 0.96767 0.97239 0.96846 0.93366 1.21984 0.89215 0.89741 0.97205 1.86392 1.48223 1.57035 1.47765 0.93020 0.95457 0.91628 0.90462 0.92530 0.84292 0.90138 0.92251 0.93965 0.94198 0.75964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.13 11.35 21.45 0.24 -51.89 15 2 C 0.02 0.82 5.30 84.66 0.45 1.27 15 3 Si 0.95 43.23 29.54 68.60 2.03 45.26 15 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 5 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 7 C -0.53 -28.76 7.79 25.60 0.20 -28.56 15 8 H 0.05 2.72 6.90 -2.91 -0.02 2.70 15 9 C 0.06 2.79 1.68 -11.46 -0.02 2.77 15 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 11 C -0.14 -6.41 5.10 30.65 0.16 -6.25 15 12 C 0.06 2.40 6.55 86.33 0.57 2.96 15 13 N -0.68 -24.15 6.87 -514.00 -3.53 -27.68 15 14 C 0.07 2.71 5.73 86.33 0.49 3.20 15 15 C -0.11 -4.41 2.03 -10.74 -0.02 -4.44 15 16 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 17 C 0.10 3.63 6.29 71.98 0.45 4.08 15 18 O -0.59 -18.66 13.22 -148.98 -1.97 -20.63 15 19 H 0.26 14.23 8.31 -92.71 -0.77 13.46 15 20 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.07 3.48 6.15 -2.39 -0.01 3.47 15 22 H 0.08 2.66 8.14 -2.39 -0.02 2.64 15 23 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.34 11.28 8.86 -89.70 -0.79 10.48 15 25 H 0.08 2.73 7.85 -2.39 -0.02 2.71 15 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.04 1.62 6.65 -2.38 -0.02 1.60 15 29 H 0.39 8.26 9.12 -74.06 -0.68 7.59 15 Total: -1.00 -59.80 233.59 -1.28 -61.07 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -0.33 Total: 18.84 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 2.28 Total: -24.97 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.29 Total: -79.57 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.97 Total: -20.63 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -59.80 -1.28 -61.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215148992.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.909 kcal (2) G-P(sol) polarization free energy of solvation -59.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds