Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46083 * 118.73096 * 2 1 4 4 C 1.52841 * 110.02329 * 198.18381 * 3 2 1 5 5 H 1.08992 * 109.37944 * 70.93077 * 4 3 2 6 6 C 1.50700 * 109.80684 * 191.24545 * 4 3 2 7 7 H 1.08000 * 120.00308 * 359.49371 * 6 4 3 8 8 C 1.37883 * 119.99858 * 179.49824 * 6 4 3 9 9 N 1.31510 * 119.99862 * 179.97438 * 8 6 4 10 10 Si 1.86798 * 119.99753 * 359.97438 * 8 6 4 11 11 H 1.48497 * 109.47052 * 90.00206 * 10 8 6 12 12 H 1.48506 * 109.46970 * 210.00070 * 10 8 6 13 13 H 1.48495 * 109.47498 * 329.99866 * 10 8 6 14 14 O 1.43241 * 108.82456 * 311.21412 * 4 3 2 15 15 C 1.42965 * 112.98774 * 68.18465 * 14 4 3 16 16 C 1.33874 * 118.72977 * 180.26722 * 2 1 3 17 17 O 1.21287 * 118.83123 * 358.11496 * 16 2 1 18 18 H 1.09002 * 109.47391 * 179.73204 * 1 2 3 19 19 H 1.09001 * 109.46813 * 59.73261 * 1 2 3 20 20 H 1.09004 * 109.47041 * 299.73388 * 1 2 3 21 21 H 1.08994 * 109.40079 * 318.49721 * 3 2 1 22 22 H 1.09006 * 109.39622 * 78.22606 * 3 2 1 23 23 H 0.97003 * 120.00053 * 180.02562 * 9 8 6 24 24 H 1.08996 * 109.42056 * 190.29765 * 15 14 4 25 25 H 1.09006 * 109.35523 * 70.46900 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2810 0.0000 4 6 3.6151 1.0841 -0.4481 5 1 3.6359 0.8540 -1.5133 6 6 4.4059 2.3400 -0.1866 7 1 3.9224 3.2016 0.2495 8 6 5.7468 2.3890 -0.5042 9 7 6.4368 3.4852 -0.2764 10 14 6.5832 0.8985 -1.2579 11 1 6.4845 0.9712 -2.7378 12 1 8.0131 0.8781 -0.8576 13 1 5.9170 -0.3386 -0.7776 14 8 4.1834 -0.0041 0.2899 15 6 3.6083 -1.2686 -0.0481 16 6 2.1085 -1.1739 -0.0055 17 8 1.4584 -2.1974 0.0247 18 1 -0.3634 -1.0276 -0.0048 19 1 -0.3633 0.5180 -0.8876 20 1 -0.3633 0.5097 0.8924 21 1 1.6661 1.9686 -0.6812 22 1 2.1572 1.6993 1.0066 23 1 7.3800 3.5199 -0.5001 24 1 3.9442 -2.0217 0.6647 25 1 3.9251 -1.5529 -1.0517 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218606506.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = -69.206507 kcal Electronic energy + Delta-G solvation = -11678.914304 eV Core-core repulsion = 9465.123840 eV Total energy + Delta-G solvation = -2213.790464 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.00022 -37.04183 -34.85891 -32.79408 -30.00390 -28.18921 -25.57253 -24.83793 -21.60302 -18.49211 -17.46276 -16.69635 -16.15014 -15.42021 -14.72952 -14.41750 -14.02624 -13.46516 -12.79643 -12.57867 -12.46190 -11.97053 -11.59439 -11.24021 -10.88998 -10.46524 -9.92400 -9.82664 -9.42226 -8.75350 -8.48007 -8.30237 -6.28199 -4.40033 2.89805 3.27201 3.33665 3.38378 3.54130 4.37757 4.61986 4.90121 5.34301 5.54056 5.59577 5.65968 5.74642 5.89593 5.97243 5.98911 6.12831 6.64086 6.74099 7.27755 7.70431 8.06141 8.21761 8.45453 8.70510 9.32753 10.81109 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.061829 B = 0.014817 C = 0.012473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.750670 B = 1889.329901 C = 2244.388444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.097 3.903 4 C 0.170 3.830 5 H 0.024 0.976 6 C -0.522 4.522 7 H 0.086 0.914 8 C 0.088 3.912 9 N -0.881 5.881 10 Si 0.876 3.124 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.229 1.229 14 O -0.368 6.368 15 C 0.041 3.959 16 C 0.490 3.510 17 O -0.569 6.569 18 H 0.084 0.916 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.269 0.731 24 H 0.113 0.887 25 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 -5.336 -1.115 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C -0.025 4.025 4 C 0.114 3.886 5 H 0.042 0.958 6 C -0.559 4.559 7 H 0.104 0.896 8 C -0.118 4.118 9 N -0.517 5.517 10 Si 0.702 3.298 11 H -0.211 1.211 12 H -0.215 1.215 13 H -0.152 1.152 14 O -0.288 6.288 15 C -0.039 4.039 16 C 0.279 3.721 17 O -0.450 6.450 18 H 0.103 0.897 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.095 0.905 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.131 0.869 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.565 -5.718 -0.956 8.759 hybrid contribution 0.308 -0.478 -0.536 0.781 sum -6.257 -6.196 -1.492 8.931 Atomic orbital electron populations 1.21692 0.80443 1.03802 1.01082 1.47621 1.07082 1.07201 1.72138 1.22235 0.94620 0.83055 1.02626 1.20527 0.89017 0.87305 0.91703 0.95797 1.20685 0.95219 0.95097 1.44862 0.89641 1.25011 0.97073 0.96126 0.93625 1.69901 1.08938 1.27427 1.45453 0.86968 0.78645 0.85589 0.78571 1.21079 1.21478 1.15166 1.88707 1.61047 1.13201 1.65827 1.22513 0.87392 0.91275 1.02741 1.21331 0.92399 0.83057 0.75302 1.90625 1.68098 1.34263 1.51979 0.89691 0.92431 0.92441 0.90492 0.90961 0.92103 0.86880 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.58 59.85 0.63 1.69 15 2 N -0.61 -11.07 3.23 -182.42 -0.59 -11.66 15 3 C 0.10 1.84 5.97 -4.35 -0.03 1.81 15 4 C 0.17 3.84 1.98 -27.96 -0.06 3.78 15 5 H 0.02 0.54 7.54 -51.93 -0.39 0.15 15 6 C -0.52 -13.86 9.36 -34.44 -0.32 -14.18 15 7 H 0.09 2.39 8.00 -52.49 -0.42 1.97 15 8 C 0.09 2.43 5.47 -17.82 -0.10 2.33 15 9 N -0.88 -25.68 13.96 55.43 0.77 -24.90 15 10 Si 0.88 20.73 27.01 -169.99 -4.59 16.14 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 13 H -0.23 -5.14 4.86 56.52 0.27 -4.86 15 14 O -0.37 -8.32 7.58 -35.23 -0.27 -8.59 15 15 C 0.04 0.78 6.49 35.83 0.23 1.01 15 16 C 0.49 9.65 7.59 -11.56 -0.09 9.56 15 17 O -0.57 -12.08 16.12 5.55 0.09 -11.99 15 18 H 0.08 1.29 6.71 -51.93 -0.35 0.94 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.08 1.32 8.13 -51.93 -0.42 0.89 15 22 H 0.07 1.39 8.09 -51.93 -0.42 0.97 15 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 24 H 0.11 1.93 8.14 -51.93 -0.42 1.51 15 25 H 0.07 1.33 8.10 -51.93 -0.42 0.91 15 LS Contribution 213.71 15.07 3.22 3.22 Total: -1.00 -30.35 213.71 -4.04 -34.39 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -2.95 Total: -2.62 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 0.28 Total: 6.01 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.18 Total: -36.56 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.18 Total: -20.58 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.59 Total: 16.14 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -30.35 -4.04 -34.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218606506.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.813 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds