Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 N 1.40490 * 126.84316 * 99.71065 * 10 9 7 12 12 H 0.96995 * 126.71663 * 0.02562 * 11 10 9 13 13 C 1.35875 * 106.57480 * 179.84060 * 11 10 9 14 14 N 1.30690 * 108.78952 * 0.42947 * 13 11 10 15 15 C 1.34364 * 110.01673 * 359.72396 * 14 13 11 16 16 S 1.71200 * 125.84447 * 179.97438 * 15 14 13 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 19 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 20 20 H 1.07998 * 125.60412 * 180.12015 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 7 2.6062 -4.3762 1.1087 12 1 2.3083 -4.2698 2.0256 13 6 3.4921 -5.2958 0.6442 14 7 3.6430 -5.1224 -0.6423 15 6 2.8718 -4.1058 -1.0630 16 16 2.7576 -3.5334 -2.6725 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5567 0.8903 19 1 0.6246 -2.5571 -0.8897 20 1 3.9932 -6.0435 1.2409 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222310532.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = 72.437636 kcal Electronic energy + Delta-G solvation = -9126.623740 eV Core-core repulsion = 7258.187955 eV Total energy + Delta-G solvation = -1868.435785 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.032 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.45374 -36.30503 -34.41352 -33.74444 -29.75344 -26.05604 -24.21633 -23.71823 -20.00224 -18.95718 -17.79549 -17.03997 -16.94567 -16.25692 -15.74662 -14.55135 -13.99486 -13.26998 -12.79094 -12.51852 -12.46140 -12.20057 -12.12833 -11.85424 -11.17717 -10.77325 -8.76094 -8.62899 -8.39816 -6.55697 -0.28690 0.08399 1.33888 1.40827 1.41068 1.46761 1.50356 2.30116 2.68332 2.94508 3.29848 4.00760 4.06368 4.68058 5.01901 5.08426 5.47261 5.65728 5.96859 6.44263 6.56219 7.14240 8.66429 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.049649 B = 0.013569 C = 0.012252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.825336 B = 2063.084189 C = 2284.799031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.272 3.728 10 N -0.344 5.344 11 N -0.461 5.461 12 H 0.474 0.526 13 C 0.380 3.620 14 N -0.556 5.556 15 C 0.472 3.528 16 S -0.717 6.717 17 H 0.275 0.725 18 H 0.067 0.933 19 H 0.043 0.957 20 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -8.666 11.954 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.068 0.932 9 C 0.154 3.846 10 N -0.135 5.135 11 N -0.185 5.185 12 H 0.327 0.673 13 C 0.084 3.916 14 N -0.287 5.287 15 C 0.102 3.898 16 S -0.591 6.591 17 H 0.084 0.916 18 H 0.085 0.915 19 H 0.061 0.939 20 H 0.341 0.659 Dipole moment (debyes) X Y Z Total from point charges 4.188 -8.308 10.599 14.104 hybrid contribution -0.400 1.181 1.226 1.749 sum 3.788 -7.128 11.825 14.317 Atomic orbital electron populations 1.69955 1.07134 1.29101 1.49010 1.25610 0.95791 1.02451 0.93461 0.85456 0.78425 0.78035 0.78909 1.21020 1.19688 1.18289 1.21195 0.93046 0.90468 1.54024 0.93202 1.19736 0.85574 0.79415 0.99850 1.50221 1.36511 1.26487 1.00234 1.46476 1.39385 1.26293 1.06371 0.67267 1.28112 0.83857 0.88955 0.90628 1.71724 1.25971 1.18699 1.12261 1.23691 0.85736 0.88353 0.91972 1.92912 1.85070 1.77667 1.03406 0.91614 0.91480 0.93874 0.65930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.62 13.29 21.45 0.28 -50.34 14 2 C 0.03 1.55 5.46 84.66 0.46 2.01 14 3 Si 0.97 43.18 29.54 68.60 2.03 45.20 14 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 14 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 14 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 14 7 C -0.55 -29.42 9.37 25.60 0.24 -29.18 14 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 14 9 C 0.27 13.00 5.92 85.63 0.51 13.51 14 10 N -0.34 -13.59 3.64 -354.08 -1.29 -14.88 14 11 N -0.46 -9.87 7.40 -59.69 -0.44 -10.31 14 12 H 0.47 5.47 8.96 -213.07 -1.91 3.56 14 13 C 0.38 6.43 13.12 179.94 2.36 8.79 14 14 N -0.56 -18.92 11.21 -200.53 -2.25 -21.17 14 15 C 0.47 21.39 8.08 179.12 1.45 22.83 14 16 S -0.72 -41.18 30.66 -56.49 -1.73 -42.92 14 17 H 0.27 14.35 8.31 -92.71 -0.77 13.58 14 18 H 0.07 2.95 8.14 -2.39 -0.02 2.93 14 19 H 0.04 2.42 8.02 -2.39 -0.02 2.40 14 20 H 0.33 -0.54 8.06 -2.91 -0.02 -0.56 14 Total: -1.00 -86.29 208.32 0.97 -85.32 By element: Atomic # 1 Polarization: -8.23 SS G_CDS: -0.64 Total: -8.87 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 5.02 Total: 17.97 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -3.70 Total: -96.70 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -41.18 SS G_CDS: -1.73 Total: -42.92 kcal Total: -86.29 0.97 -85.32 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222310532.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.756 kcal (2) G-P(sol) polarization free energy of solvation -86.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds