Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46919 * 299.99802 * 3 2 1 6 6 H 1.48500 * 109.47273 * 59.99883 * 3 2 1 7 7 C 1.38814 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99434 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99596 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46679 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.82117 * 303.11499 * 11 10 9 13 13 C 1.54894 * 110.75410 * 66.45847 * 11 10 9 14 14 C 1.54266 * 104.31305 * 156.31914 * 13 11 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 11 16 16 H 1.09006 * 110.02998 * 240.67078 * 15 14 13 17 17 O 1.42894 * 110.03667 * 119.28613 * 15 14 13 18 18 C 1.54266 * 106.59800 * 359.97438 * 15 14 13 19 19 H 0.96996 * 119.99647 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99924 * 359.97438 * 9 7 2 21 21 H 1.09005 * 109.47462 * 60.00382 * 10 9 7 22 22 H 1.08995 * 109.47696 * 299.99705 * 10 9 7 23 23 H 1.09002 * 110.48891 * 37.57340 * 13 11 10 24 24 H 1.08998 * 110.48494 * 275.06427 * 13 11 10 25 25 H 1.09001 * 110.03084 * 95.60669 * 14 13 11 26 26 H 1.08995 * 110.03255 * 217.03136 * 14 13 11 27 27 H 0.96696 * 114.00664 * 61.44751 * 17 15 14 28 28 H 1.09005 * 110.48526 * 142.29451 * 18 15 14 29 29 H 1.09007 * 110.48724 * 264.79935 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.3887 -4.7519 0.8550 13 6 0.2679 -4.8618 -1.3261 14 6 -0.1944 -6.3286 -1.4473 15 6 0.7836 -7.1686 -0.6074 16 1 1.2925 -7.8943 -1.2419 17 8 0.0785 -7.8417 0.4374 18 6 1.8066 -6.1831 -0.0056 19 1 -0.4849 0.8400 -0.0004 20 1 0.3556 -2.3880 0.0005 21 1 2.6841 -3.7142 0.8922 22 1 2.6854 -3.7150 -0.8877 23 1 0.9106 -4.5938 -2.1647 24 1 -0.5919 -4.1936 -1.2769 25 1 -1.2070 -6.4343 -1.0579 26 1 -0.1598 -6.6460 -2.4894 27 1 -0.5946 -8.4604 0.1225 28 1 2.0696 -6.4792 1.0099 29 1 2.6987 -6.1307 -0.6299 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227688685.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = -58.405529 kcal Electronic energy + Delta-G solvation = -11350.613602 eV Core-core repulsion = 9273.124598 eV Total energy + Delta-G solvation = -2077.489004 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.69889 -35.59559 -33.71133 -31.05246 -28.70516 -27.56923 -24.31992 -22.15509 -20.21055 -19.56180 -17.36625 -16.95481 -15.14074 -14.84370 -14.24594 -13.98728 -13.28867 -12.95674 -12.81504 -12.10879 -12.04293 -11.06211 -11.01567 -10.81241 -10.66384 -10.41782 -10.25506 -10.15475 -9.90078 -9.75229 -9.59048 -8.81609 -6.84744 -5.71270 -2.99055 3.46552 3.51911 3.54399 4.32757 4.62728 4.81969 4.85812 5.12969 5.49550 5.59191 5.67249 5.74177 5.90537 5.94506 6.03902 6.21133 6.31918 6.34740 6.38582 6.61353 6.66730 6.89375 7.05191 7.71692 7.75456 8.48239 9.59143 10.19053 10.54043 11.52047 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.093509 B = 0.008009 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.365221 B = 3495.403870 C = 3619.988729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.160 3.840 11 C -0.095 4.095 12 H 0.076 0.924 13 C -0.111 4.111 14 C -0.158 4.158 15 C 0.099 3.901 16 H 0.052 0.948 17 O -0.567 6.567 18 C -0.111 4.111 19 H 0.254 0.746 20 H 0.384 0.616 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.372 0.628 28 H 0.073 0.927 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -13.628 -2.596 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.032 3.968 11 C -0.114 4.114 12 H 0.095 0.905 13 C -0.148 4.148 14 C -0.196 4.196 15 C 0.040 3.960 16 H 0.070 0.930 17 O -0.372 6.372 18 C -0.149 4.149 19 H 0.064 0.936 20 H 0.217 0.783 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.218 0.782 28 H 0.092 0.908 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.153 -13.145 -2.229 13.382 hybrid contribution -0.276 0.636 -0.429 0.816 sum 0.876 -12.508 -2.659 12.818 Atomic orbital electron populations 1.69677 1.05111 1.25420 1.58183 1.24736 0.95519 0.97650 1.03281 0.86114 0.78772 0.84182 0.77141 1.20583 1.21936 1.21909 1.19311 0.91077 0.84281 1.42110 0.91180 1.42365 1.05909 0.99977 1.89355 1.20651 0.93148 0.85378 0.97596 1.22351 0.97445 0.93728 0.97891 0.90516 1.22282 1.00323 0.94342 0.97897 1.22951 0.99622 0.97338 0.99643 1.22500 0.92402 0.93066 0.88002 0.93027 1.86566 1.54933 1.60424 1.35283 1.22437 0.96840 0.94012 1.01643 0.93639 0.78270 0.96459 0.96371 0.91476 0.91199 0.91225 0.91890 0.78184 0.90842 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.06 55.49 0.72 -28.26 15 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 15 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 15 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 15 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 15 9 N -0.73 -19.34 5.45 -59.90 -0.33 -19.66 15 10 C 0.16 3.40 5.71 -4.04 -0.02 3.37 15 11 C -0.10 -1.68 2.98 -88.42 -0.26 -1.94 15 12 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 13 C -0.11 -1.81 5.96 -25.07 -0.15 -1.96 15 14 C -0.16 -2.04 6.60 -25.62 -0.17 -2.20 15 15 C 0.10 1.26 4.26 -25.62 -0.11 1.15 15 16 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 17 O -0.57 -7.28 13.22 -35.23 -0.47 -7.75 15 18 C -0.11 -1.62 6.03 -24.87 -0.15 -1.77 15 19 H 0.25 7.57 8.31 -40.82 -0.34 7.23 15 20 H 0.38 10.61 7.53 -40.82 -0.31 10.30 15 21 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 15 22 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 15 23 H 0.07 1.12 8.01 -51.93 -0.42 0.70 15 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.07 0.87 7.95 -51.93 -0.41 0.46 15 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 27 H 0.37 3.03 9.10 45.56 0.41 3.45 15 28 H 0.07 1.08 8.07 -51.93 -0.42 0.67 15 29 H 0.08 1.03 8.06 -51.93 -0.42 0.62 15 LS Contribution 243.30 15.07 3.67 3.67 Total: -1.00 -32.12 243.30 -6.17 -38.30 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -3.64 Total: 6.77 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.11 Total: -10.93 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.40 Total: -47.93 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.47 Total: -7.75 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.12 -6.17 -38.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227688685.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.107 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds