Wall clock time and date at job start Mon Mar 30 2020 01:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47150 * 269.99857 * 3 2 1 5 5 H 1.48495 * 109.46965 * 29.99717 * 3 2 1 6 6 H 1.48500 * 109.47228 * 149.99951 * 3 2 1 7 7 C 1.37873 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00398 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99829 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.34584 * 125.40221 * 270.04343 * 10 9 7 12 12 O 1.21549 * 125.82206 * 359.96554 * 11 10 9 13 13 N 1.34860 * 108.35161 * 179.97438 * 11 10 9 14 14 H 0.96999 * 126.47350 * 180.25999 * 13 11 10 15 15 N 1.40335 * 107.04597 * 0.02562 * 13 11 10 16 16 H 0.97003 * 126.47138 * 180.02562 * 15 13 11 17 17 C 1.34588 * 125.39513 * 89.99965 * 10 9 7 18 18 O 1.21545 * 125.82516 * 0.02562 * 17 10 9 19 19 H 0.96994 * 119.99858 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46590 * 60.00147 * 9 7 2 21 21 H 1.08990 * 109.47109 * 300.00138 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5117 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0022 11 6 4.2587 -3.3098 1.0998 12 8 4.1276 -2.9403 2.2503 13 7 4.6884 -4.5258 0.7054 14 1 4.9443 -5.2621 1.2826 15 7 4.6901 -4.5262 -0.6980 16 1 4.9501 -5.2620 -1.2740 17 6 4.2603 -3.3109 -1.0943 18 8 4.1307 -2.9426 -2.2453 19 1 -0.4849 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8911 21 1 3.8753 -0.6804 -0.8887 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230388046.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:38 Heat of formation + Delta-G solvation = -19.183446 kcal Electronic energy + Delta-G solvation = -11258.336995 eV Core-core repulsion = 8943.175351 eV Total energy + Delta-G solvation = -2315.161644 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.76402 -39.49418 -37.74239 -36.44740 -34.55430 -31.28254 -30.53015 -25.46985 -24.04445 -22.19626 -20.31475 -19.37350 -18.41811 -17.82291 -17.01042 -16.89088 -16.43491 -15.82280 -15.21558 -14.56358 -13.92976 -13.58162 -12.89944 -12.54316 -12.36543 -12.11458 -11.79233 -11.60992 -10.84937 -10.59491 -9.77773 -8.36978 -6.46555 0.75695 1.14568 1.28267 1.39712 1.43129 1.51790 1.97793 2.31663 2.96646 3.74336 4.02832 4.56851 4.76413 4.98268 5.08374 5.28378 5.83622 6.09401 6.43200 6.53039 7.01817 7.11874 7.18511 8.79858 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.053098 B = 0.014111 C = 0.012952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.205047 B = 1983.821409 C = 2161.384938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.239 1.239 7 C -0.554 4.554 8 H 0.029 0.971 9 C 0.242 3.758 10 N -0.565 5.565 11 C 0.690 3.310 12 O -0.566 6.566 13 N -0.497 5.497 14 H 0.474 0.526 15 N -0.497 5.497 16 H 0.474 0.526 17 C 0.690 3.310 18 O -0.566 6.566 19 H 0.273 0.727 20 H 0.060 0.940 21 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.240 -7.895 0.027 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.163 1.163 7 C -0.592 4.592 8 H 0.048 0.952 9 C 0.121 3.879 10 N -0.311 5.311 11 C 0.389 3.611 12 O -0.438 6.438 13 N -0.262 5.262 14 H 0.328 0.672 15 N -0.262 5.262 16 H 0.328 0.672 17 C 0.389 3.611 18 O -0.438 6.438 19 H 0.082 0.918 20 H 0.077 0.923 21 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.899 -7.247 0.030 13.932 hybrid contribution -0.143 -0.173 -0.017 0.225 sum 11.756 -7.420 0.013 13.901 Atomic orbital electron populations 1.70031 1.08324 1.28826 1.50586 1.25844 0.95796 1.03496 0.93061 0.85683 0.79760 0.77603 0.79842 1.18343 1.19962 1.16254 1.21342 0.90697 0.93898 1.53299 0.95243 1.19590 0.93670 0.75099 0.99532 1.46126 1.60802 1.17033 1.07157 1.16053 0.79231 0.81317 0.84527 1.91004 1.60248 1.74405 1.18161 1.44707 1.70626 1.15478 0.95359 0.67205 1.44708 1.70542 1.15578 0.95344 0.67206 1.16059 0.79233 0.81312 0.84539 1.91003 1.60279 1.74446 1.18082 0.91819 0.92255 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.03 13.96 21.45 0.30 -58.74 14 2 C 0.02 1.02 5.47 84.65 0.46 1.48 14 3 Si 0.95 43.15 27.47 68.60 1.88 45.04 14 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 14 5 H -0.27 -12.10 7.11 99.48 0.71 -11.40 14 6 H -0.24 -9.92 6.54 99.48 0.65 -9.27 14 7 C -0.55 -32.97 9.94 25.60 0.25 -32.72 14 8 H 0.03 1.97 8.06 -2.91 -0.02 1.94 14 9 C 0.24 11.89 4.66 85.64 0.40 12.29 14 10 N -0.57 -24.19 2.63 -794.04 -2.09 -26.28 14 11 C 0.69 26.17 8.92 179.09 1.60 27.76 14 12 O -0.57 -25.21 17.77 -3.87 -0.07 -25.28 14 13 N -0.50 -11.86 7.42 -184.80 -1.37 -13.23 14 14 H 0.47 6.56 8.96 -213.17 -1.91 4.65 14 15 N -0.50 -11.85 7.42 -184.80 -1.37 -13.22 14 16 H 0.47 6.55 8.96 -213.16 -1.91 4.64 14 17 C 0.69 26.12 8.92 179.09 1.60 27.72 14 18 O -0.57 -25.15 17.77 -3.86 -0.07 -25.22 14 19 H 0.27 15.79 8.31 -92.71 -0.77 15.02 14 20 H 0.06 2.84 7.09 -2.39 -0.02 2.82 14 21 H 0.06 2.75 7.46 -2.39 -0.02 2.73 14 Total: -1.00 -78.72 201.95 -1.06 -79.78 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -2.59 Total: 0.62 kcal Atomic # 6 Polarization: 32.22 SS G_CDS: 4.31 Total: 36.53 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.53 Total: -111.47 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.14 Total: -50.50 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Total: -78.72 -1.06 -79.78 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230388046.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.592 kcal (2) G-P(sol) polarization free energy of solvation -78.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds