Wall clock time and date at job start Mon Mar 30 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00217 * 2 1 4 4 H 1.48501 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46896 * 299.99512 * 3 2 1 6 6 H 1.48491 * 109.47452 * 59.99662 * 3 2 1 7 7 C 1.38815 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99925 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00062 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.05190 * 33.58073 * 10 9 7 12 12 C 1.54367 * 110.04508 * 272.10816 * 10 9 7 13 13 C 1.54891 * 104.19676 * 217.09144 * 12 10 9 14 14 C 1.54887 * 102.74630 * 37.96821 * 13 12 10 15 15 C 1.53871 * 110.03060 * 154.99648 * 10 9 7 16 16 H 1.08996 * 110.03519 * 238.61940 * 15 10 9 17 17 C 1.52999 * 110.03261 * 0.02562 * 15 10 9 18 18 O 1.42903 * 109.47256 * 184.31144 * 17 15 10 19 19 H 0.97001 * 119.99884 * 0.02562 * 1 2 3 20 20 H 0.96998 * 119.99853 * 359.97438 * 9 7 2 21 21 H 1.08999 * 110.46516 * 98.42483 * 12 10 9 22 22 H 1.09004 * 110.62274 * 335.83446 * 12 10 9 23 23 H 1.09003 * 110.75637 * 279.65431 * 13 12 10 24 24 H 1.08999 * 110.75532 * 156.28332 * 13 12 10 25 25 H 1.09007 * 110.48851 * 203.38007 * 14 13 12 26 26 H 1.08998 * 110.59984 * 80.79808 * 14 13 12 27 27 H 1.08997 * 109.47286 * 64.30704 * 17 15 10 28 28 H 1.09008 * 109.47201 * 304.30485 * 17 15 10 29 29 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6569 0.0017 11 1 2.9832 -3.5538 0.5687 12 6 2.3699 -4.0891 -1.4471 13 6 2.2121 -5.6298 -1.4262 14 6 0.9998 -5.8365 -0.4846 15 6 1.1864 -4.7681 0.6125 16 1 1.6882 -5.2038 1.4765 17 6 -0.1725 -4.2002 1.0269 18 8 -0.9336 -5.2165 1.6827 19 1 -0.4850 0.8401 -0.0004 20 1 0.3555 -2.3881 0.0005 21 1 3.3897 -3.8137 -1.7158 22 1 1.6592 -3.6423 -2.1424 23 1 3.1043 -6.1040 -1.0170 24 1 1.9949 -6.0094 -2.4246 25 1 1.0197 -6.8363 -0.0507 26 1 0.0652 -5.6731 -1.0211 27 1 -0.7089 -3.8589 0.1415 28 1 -0.0237 -3.3617 1.7073 29 1 -1.8091 -4.9264 1.9733 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231306741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:48 Heat of formation + Delta-G solvation = -49.275129 kcal Electronic energy + Delta-G solvation = -11724.433772 eV Core-core repulsion = 9647.340693 eV Total energy + Delta-G solvation = -2077.093080 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.45524 -35.66944 -33.55297 -30.65434 -29.33780 -26.53600 -23.83845 -23.19396 -20.12985 -18.38165 -17.78433 -16.36557 -15.18738 -14.90986 -14.16980 -13.92887 -13.24605 -13.05772 -12.67940 -11.94120 -11.45821 -11.04314 -10.79842 -10.50085 -10.47963 -10.45398 -10.15066 -10.08400 -9.83657 -9.53910 -9.35246 -8.88246 -6.95359 -5.78702 -3.06690 3.42565 3.48569 3.50561 4.57355 4.70282 5.18794 5.21253 5.45554 5.59181 5.83122 5.90995 6.05938 6.07973 6.19142 6.24268 6.28937 6.41600 6.52962 6.56208 6.65663 6.87501 6.89352 7.16248 7.71318 8.06774 8.41151 9.51808 10.09497 10.43627 11.44473 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.047804 B = 0.012108 C = 0.010223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.590007 B = 2311.959765 C = 2738.222728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.053 0.947 12 C -0.141 4.141 13 C -0.127 4.127 14 C -0.109 4.109 15 C -0.096 4.096 16 H 0.070 0.930 17 C 0.084 3.916 18 O -0.585 6.585 19 H 0.254 0.746 20 H 0.386 0.614 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -8.960 -0.060 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.067 3.933 11 H 0.071 0.929 12 C -0.182 4.182 13 C -0.165 4.165 14 C -0.147 4.147 15 C -0.116 4.116 16 H 0.089 0.911 17 C 0.006 3.994 18 O -0.389 6.389 19 H 0.064 0.936 20 H 0.222 0.778 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.672 -9.145 -0.167 9.298 hybrid contribution -0.347 1.376 0.024 1.419 sum 1.325 -7.769 -0.143 7.882 Atomic orbital electron populations 1.69659 1.05112 1.25554 1.58159 1.24738 0.95540 0.97704 1.03156 0.86110 0.78798 0.84107 0.77144 1.20571 1.21918 1.21913 1.19351 0.91133 0.84203 1.42122 0.91088 1.42752 1.05971 0.99848 1.88419 1.20904 0.93944 0.85514 0.92934 0.92867 1.23146 1.00976 0.93615 1.00446 1.22488 0.97853 0.97471 0.98690 1.22297 0.98137 0.97987 0.96254 1.21990 0.95095 0.96490 0.97997 0.91114 1.22280 0.91468 0.89484 0.96138 1.86393 1.31958 1.40974 1.79624 0.93577 0.77767 0.92795 0.91401 0.92239 0.92547 0.92473 0.91989 0.93401 0.92048 0.78163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.02 13.06 55.49 0.72 -27.29 15 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 15 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 7 C -0.24 -6.57 9.96 -15.05 -0.15 -6.72 15 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 15 9 N -0.73 -18.19 4.45 -52.29 -0.23 -18.42 15 10 C 0.18 3.65 3.54 -66.76 -0.24 3.42 15 11 H 0.05 1.11 8.09 -51.93 -0.42 0.69 15 12 C -0.14 -2.62 6.53 -25.02 -0.16 -2.78 15 13 C -0.13 -1.94 6.91 -24.74 -0.17 -2.11 15 14 C -0.11 -1.75 6.21 -25.07 -0.16 -1.91 15 15 C -0.10 -1.75 3.19 -89.51 -0.29 -2.04 15 16 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 17 C 0.08 1.56 4.96 37.16 0.18 1.75 15 18 O -0.58 -9.69 13.49 -35.23 -0.48 -10.17 15 19 H 0.25 7.37 8.31 -40.82 -0.34 7.03 15 20 H 0.39 10.02 5.08 -40.82 -0.21 9.82 15 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.07 1.38 8.06 -51.93 -0.42 0.96 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.06 1.02 7.77 -51.93 -0.40 0.62 15 27 H 0.05 0.93 7.08 -51.93 -0.37 0.57 15 28 H 0.06 1.28 7.46 -51.92 -0.39 0.89 15 29 H 0.37 4.55 9.12 45.56 0.42 4.97 15 LS Contribution 238.17 15.07 3.59 3.59 Total: -1.00 -30.32 238.17 -5.94 -36.26 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.45 Total: 9.60 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.07 Total: -10.95 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.49 Total: -45.72 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.48 Total: -10.17 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.32 -5.94 -36.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231306741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.011 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds