Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99661 * 2 1 4 4 H 1.48505 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47203 * 300.00353 * 3 2 1 6 6 H 1.48501 * 109.47028 * 60.00340 * 3 2 1 7 7 C 1.38813 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99742 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00278 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.81646 * 31.66675 * 10 9 7 12 12 C 1.54888 * 110.75832 * 268.33271 * 10 9 7 13 13 C 1.54268 * 104.19675 * 203.74143 * 12 10 9 14 14 C 1.53872 * 106.59890 * 23.61176 * 13 12 10 15 15 C 1.54271 * 106.59942 * 359.97438 * 14 13 12 16 16 H 1.09007 * 110.47873 * 95.20576 * 15 14 13 17 17 C 1.52997 * 110.48875 * 217.71363 * 15 14 13 18 18 O 1.42898 * 109.47319 * 293.55107 * 17 15 14 19 19 H 0.96994 * 120.00575 * 359.97438 * 1 2 3 20 20 H 0.97006 * 119.99836 * 0.02562 * 9 7 2 21 21 H 1.08993 * 110.48797 * 85.05999 * 12 10 9 22 22 H 1.09005 * 110.59606 * 322.47414 * 12 10 9 23 23 H 1.08992 * 110.03012 * 264.32193 * 13 12 10 24 24 H 1.09004 * 110.02792 * 142.89105 * 13 12 10 25 25 H 1.09009 * 110.03007 * 240.71427 * 14 13 12 26 26 H 1.09002 * 110.07845 * 119.30766 * 14 13 12 27 27 H 1.09002 * 109.47153 * 173.54800 * 17 15 14 28 28 H 1.09001 * 109.46832 * 53.54991 * 17 15 14 29 29 H 0.96701 * 113.99881 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8912 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0029 -3.5586 0.5343 12 6 2.2962 -4.1532 -1.4483 13 6 2.4854 -5.6770 -1.2994 14 6 1.7858 -6.0809 0.0102 15 6 1.1964 -4.7884 0.6118 16 1 0.1519 -4.6743 0.3214 17 6 1.3290 -4.7982 2.1360 18 8 0.5035 -5.8304 2.6794 19 1 -0.4851 0.8399 0.0004 20 1 0.3557 -2.3881 -0.0005 21 1 3.1935 -3.6963 -1.8656 22 1 1.4315 -3.9356 -2.0753 23 1 3.5470 -5.9178 -1.2453 24 1 2.0272 -6.1942 -2.1424 25 1 2.5080 -6.5179 0.7000 26 1 0.9882 -6.7946 -0.1963 27 1 1.0141 -3.8337 2.5343 28 1 2.3680 -4.9824 2.4091 29 1 0.5377 -5.8946 3.6436 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231306748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = -81.131067 kcal Electronic energy + Delta-G solvation = -11563.678959 eV Core-core repulsion = 9485.204502 eV Total energy + Delta-G solvation = -2078.474457 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73576 -37.18230 -35.48460 -32.53388 -30.87721 -28.29098 -25.79011 -24.41874 -21.21370 -20.84815 -19.06432 -18.12820 -17.12597 -16.26397 -15.90210 -15.33429 -15.18292 -14.52973 -14.09369 -13.51716 -13.24420 -12.91005 -12.67354 -12.36515 -12.08330 -11.94847 -11.76154 -11.67075 -11.39135 -11.18244 -10.92864 -10.79790 -8.99749 -7.94191 -5.22918 1.47251 1.48048 1.58122 2.56113 3.34237 3.38148 3.71361 3.89919 4.07962 4.23113 4.43703 4.54464 4.65174 4.69751 4.77983 4.83953 4.96726 5.07363 5.20653 5.27404 5.40336 5.48110 5.57355 5.61109 6.27878 6.93195 7.33216 8.09475 8.32998 9.29766 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.047709 B = 0.011001 C = 0.009675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.746562 B = 2544.496706 C = 2893.465213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.733 5.733 10 C 0.174 3.826 11 H 0.059 0.941 12 C -0.140 4.140 13 C -0.114 4.114 14 C -0.101 4.101 15 C -0.098 4.098 16 H 0.054 0.946 17 C 0.094 3.906 18 O -0.586 6.586 19 H 0.250 0.750 20 H 0.371 0.629 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -11.204 2.271 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.372 5.372 10 C 0.065 3.935 11 H 0.077 0.923 12 C -0.181 4.181 13 C -0.152 4.152 14 C -0.139 4.139 15 C -0.118 4.118 16 H 0.072 0.928 17 C 0.016 3.984 18 O -0.394 6.394 19 H 0.059 0.941 20 H 0.202 0.798 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.469 -11.177 1.658 12.554 hybrid contribution -0.203 1.373 0.494 1.473 sum 5.266 -9.804 2.152 11.335 Atomic orbital electron populations 1.69834 1.06708 1.25925 1.59829 1.25574 0.96350 1.01135 1.03969 0.85076 0.78308 0.79843 0.76568 1.18863 1.22246 1.22090 1.19700 0.91479 0.85182 1.40599 0.90450 1.42601 1.05297 1.01005 1.88291 1.21402 0.93992 0.84086 0.94055 0.92343 1.22905 1.00335 0.96195 0.98642 1.22069 1.01165 0.94381 0.97622 1.21991 0.99707 0.95522 0.96652 1.22160 0.99440 0.96347 0.93807 0.92773 1.22052 0.93757 0.89210 0.93377 1.86413 1.69583 1.56049 1.27365 0.94099 0.79769 0.92686 0.93839 0.90435 0.91237 0.90632 0.91691 0.95407 0.92144 0.75739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.17 15 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 15 3 Si 0.97 46.41 29.55 68.60 2.03 48.44 15 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 15 6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 15 7 C -0.24 -13.29 9.96 84.03 0.84 -12.45 15 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 15 9 N -0.73 -37.75 5.23 -316.89 -1.66 -39.41 15 10 C 0.17 6.99 2.98 46.28 0.14 7.13 15 11 H 0.06 2.32 8.01 -2.39 -0.02 2.30 15 12 C -0.14 -5.05 6.51 31.67 0.21 -4.84 15 13 C -0.11 -3.11 6.80 31.32 0.21 -2.90 15 14 C -0.10 -2.82 6.22 31.32 0.19 -2.62 15 15 C -0.10 -3.43 2.77 -9.73 -0.03 -3.46 15 16 H 0.05 2.15 8.02 -2.38 -0.02 2.13 15 17 C 0.09 2.98 6.35 71.98 0.46 3.44 15 18 O -0.59 -16.69 13.49 -148.98 -2.01 -18.70 15 19 H 0.25 15.05 8.31 -92.71 -0.77 14.28 15 20 H 0.37 20.82 7.77 -92.70 -0.72 20.10 15 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.04 1.72 8.14 -2.38 -0.02 1.70 15 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.07 1.71 8.14 -2.38 -0.02 1.69 15 25 H 0.07 1.87 7.77 -2.38 -0.02 1.85 15 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 15 28 H 0.06 1.67 8.05 -2.39 -0.02 1.65 15 29 H 0.39 7.19 9.12 -74.06 -0.68 6.51 15 Total: -1.00 -65.45 243.48 0.87 -64.58 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.26 Total: 25.03 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 2.49 Total: -19.78 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -1.37 Total: -99.57 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -2.01 Total: -18.70 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -65.45 0.87 -64.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231306748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.551 kcal (2) G-P(sol) polarization free energy of solvation -65.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds