Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09001 * 110.01553 * 325.42287 * 10 9 7 12 12 C 1.54271 * 110.03532 * 86.81594 * 10 9 7 13 13 C 1.54886 * 104.19583 * 142.89341 * 12 10 9 14 14 C 1.54892 * 102.74796 * 322.05652 * 13 12 10 15 15 C 1.53876 * 110.03116 * 204.03237 * 10 9 7 16 16 H 1.09001 * 110.03093 * 121.42767 * 15 10 9 17 17 C 1.53004 * 110.03137 * 359.97438 * 15 10 9 18 18 O 1.42900 * 109.46976 * 175.00087 * 17 15 10 19 19 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 20 20 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 21 21 H 1.09003 * 110.48007 * 261.57321 * 12 10 9 22 22 H 1.08996 * 110.48374 * 24.08070 * 12 10 9 23 23 H 1.09004 * 110.75410 * 80.37225 * 13 12 10 24 24 H 1.08994 * 110.75459 * 203.74115 * 13 12 10 25 25 H 1.09003 * 110.48297 * 156.62066 * 14 13 12 26 26 H 1.08995 * 110.48321 * 279.13271 * 14 13 12 27 27 H 1.09005 * 109.46723 * 295.00169 * 17 15 10 28 28 H 1.08993 * 109.47123 * 54.99750 * 17 15 10 29 29 H 0.96699 * 113.99471 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9774 -3.5598 -0.5700 12 6 2.3853 -4.0705 1.4570 13 6 2.2270 -5.6112 1.4573 14 6 1.0048 -5.8294 0.5311 15 6 1.1807 -4.7750 -0.5826 16 1 1.6748 -5.2212 -1.4456 17 6 -0.1821 -4.2118 -0.9908 18 8 -0.9430 -5.2310 -1.6420 19 1 -0.4850 0.8401 -0.0004 20 1 0.3555 -2.3880 0.0005 21 1 3.4079 -3.7919 1.7114 22 1 1.6819 -3.6125 2.1524 23 1 3.1147 -6.0908 1.0449 24 1 2.0202 -5.9780 2.4626 25 1 1.0201 -6.8347 0.1099 26 1 0.0771 -5.6597 1.0775 27 1 -0.7152 -3.8715 -0.1030 28 1 -0.0393 -3.3734 -1.6725 29 1 -1.8209 -4.9439 -1.9285 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231306749.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = -49.171665 kcal Electronic energy + Delta-G solvation = -11724.346030 eV Core-core repulsion = 9647.257437 eV Total energy + Delta-G solvation = -2077.088593 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.45529 -35.67376 -33.55100 -30.65409 -29.34068 -26.53578 -23.83857 -23.19583 -20.13099 -18.38208 -17.78522 -16.36412 -15.18749 -14.90560 -14.17060 -13.93380 -13.24806 -13.06365 -12.67763 -11.94324 -11.45636 -11.04097 -10.79921 -10.49891 -10.48071 -10.45615 -10.15203 -10.08584 -9.83631 -9.53467 -9.35709 -8.88160 -6.95252 -5.78660 -3.06652 3.42581 3.48596 3.50589 4.57366 4.70177 5.18455 5.21194 5.45390 5.59132 5.83261 5.90968 6.05659 6.07580 6.19072 6.24222 6.28771 6.41552 6.52709 6.56214 6.65575 6.87275 6.89422 7.16645 7.71358 8.06618 8.41235 9.51865 10.09551 10.43663 11.44529 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.047748 B = 0.012117 C = 0.010223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.269708 B = 2310.334129 C = 2738.397678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.053 0.947 12 C -0.141 4.141 13 C -0.127 4.127 14 C -0.109 4.109 15 C -0.096 4.096 16 H 0.071 0.929 17 C 0.083 3.917 18 O -0.584 6.584 19 H 0.254 0.746 20 H 0.386 0.614 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 -8.965 0.136 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.067 3.933 11 H 0.071 0.929 12 C -0.182 4.182 13 C -0.165 4.165 14 C -0.147 4.147 15 C -0.115 4.115 16 H 0.089 0.911 17 C 0.006 3.994 18 O -0.389 6.389 19 H 0.064 0.936 20 H 0.222 0.778 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.668 -9.149 0.239 9.303 hybrid contribution -0.347 1.376 -0.014 1.419 sum 1.321 -7.773 0.224 7.888 Atomic orbital electron populations 1.69661 1.05110 1.25552 1.58169 1.24738 0.95541 0.97704 1.03161 0.86110 0.78797 0.84108 0.77144 1.20572 1.21912 1.21918 1.19348 0.91134 0.84203 1.42106 0.91091 1.42760 1.05971 0.99851 1.88434 1.20891 0.93885 0.85510 0.93032 0.92934 1.23131 1.00965 0.93636 1.00462 1.22487 0.97810 0.97461 0.98739 1.22320 0.98100 0.98047 0.96226 1.21999 0.95043 0.96515 0.97958 0.91073 1.22285 0.91442 0.89458 0.96225 1.86394 1.31678 1.40936 1.79931 0.93579 0.77766 0.92793 0.91377 0.92238 0.92545 0.92470 0.91987 0.93416 0.91997 0.78161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.03 13.06 55.49 0.72 -27.30 15 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 15 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 7 C -0.24 -6.57 9.96 -15.06 -0.15 -6.72 15 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 15 9 N -0.73 -18.20 4.45 -52.34 -0.23 -18.43 15 10 C 0.18 3.65 3.53 -66.81 -0.24 3.41 15 11 H 0.05 1.10 8.09 -51.93 -0.42 0.68 15 12 C -0.14 -2.63 6.53 -25.07 -0.16 -2.79 15 13 C -0.13 -1.94 6.91 -24.74 -0.17 -2.11 15 14 C -0.11 -1.75 6.22 -25.01 -0.16 -1.91 15 15 C -0.10 -1.74 3.19 -89.44 -0.29 -2.03 15 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 17 C 0.08 1.55 4.96 37.16 0.18 1.74 15 18 O -0.58 -9.68 13.51 -35.23 -0.48 -10.16 15 19 H 0.25 7.37 8.31 -40.82 -0.34 7.03 15 20 H 0.39 10.02 5.06 -40.82 -0.21 9.81 15 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.07 1.39 8.05 -51.93 -0.42 0.97 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.06 1.02 7.77 -51.93 -0.40 0.61 15 27 H 0.05 0.93 7.12 -51.93 -0.37 0.56 15 28 H 0.06 1.29 7.41 -51.93 -0.38 0.90 15 29 H 0.37 4.55 9.12 45.56 0.42 4.96 15 LS Contribution 238.17 15.07 3.59 3.59 Total: -1.00 -30.34 238.17 -5.94 -36.28 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.45 Total: 9.60 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.07 Total: -10.96 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.49 Total: -45.74 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.48 Total: -10.16 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.34 -5.94 -36.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231306749.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.893 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds