Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47097 * 125.55911 * 2 1 4 4 C 1.54097 * 103.77477 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.51650 * 118.63710 * 4 3 2 6 6 C 1.53006 * 110.51792 * 241.37201 * 4 3 2 7 7 C 1.50704 * 109.46515 * 185.00154 * 6 4 3 8 8 H 1.07995 * 120.00522 * 359.97438 * 7 6 4 9 9 C 1.37881 * 119.99510 * 179.97438 * 7 6 4 10 10 N 1.31521 * 120.00082 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99879 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47136 * 59.99999 * 11 9 7 13 13 H 1.48504 * 109.47003 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46921 * 300.00335 * 11 9 7 15 15 O 1.45701 * 104.00841 * 359.97438 * 4 3 2 16 16 C 1.33777 * 109.47596 * 359.75923 * 15 4 3 17 17 O 1.21511 * 123.06583 * 180.24118 * 16 15 4 18 18 H 1.09002 * 109.47391 * 89.99443 * 1 2 3 19 19 H 1.09001 * 109.46813 * 329.99500 * 1 2 3 20 20 H 1.09004 * 109.47041 * 209.99627 * 1 2 3 21 21 H 1.08995 * 110.56695 * 298.55592 * 3 2 1 22 22 H 1.09001 * 110.56267 * 61.26636 * 3 2 1 23 23 H 1.09000 * 109.46999 * 305.00210 * 6 4 3 24 24 H 1.08998 * 109.47080 * 65.00176 * 6 4 3 25 25 H 0.96993 * 119.99660 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3204 1.1967 0.0000 4 6 3.7513 0.6248 0.0007 5 1 4.2880 0.9371 -0.8952 6 6 4.5037 1.0636 1.2586 7 6 5.9340 0.5958 1.1773 8 1 6.2724 0.0407 0.3150 9 6 6.8105 0.8766 2.2039 10 7 6.3982 1.5522 3.2544 11 14 8.5831 0.2961 2.1035 12 1 9.2312 0.8892 0.9062 13 1 9.3134 0.7221 3.3244 14 1 8.6139 -1.1851 2.0004 15 8 3.5542 -0.8188 0.0016 16 6 2.2443 -1.0901 0.0068 17 8 1.8016 -2.2217 0.0130 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3633 0.8900 0.5139 20 1 -0.3633 -0.8901 0.5138 21 1 2.1463 1.7918 -0.8963 22 1 2.1439 1.7934 0.8949 23 1 4.4807 2.1507 1.3351 24 1 4.0281 0.6275 2.1371 25 1 7.0148 1.7493 3.9767 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231475933.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = -100.186604 kcal Electronic energy + Delta-G solvation = -11315.071184 eV Core-core repulsion = 9099.937323 eV Total energy + Delta-G solvation = -2215.133861 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.45734 -38.42659 -36.38579 -35.35015 -32.62235 -29.40321 -27.55582 -25.20501 -23.15939 -21.87731 -18.77314 -18.18405 -17.88534 -17.40334 -16.45547 -16.00028 -15.08901 -14.97388 -14.58543 -14.10660 -13.59123 -13.48744 -13.13711 -13.07117 -12.54543 -12.48556 -12.19337 -11.75586 -11.29887 -11.20921 -10.60330 -9.86844 -8.23399 -6.32455 1.40952 1.44116 1.51394 1.60634 1.70027 2.40712 2.65910 3.12946 3.41787 3.81747 3.99144 4.48703 4.51675 4.60591 4.80298 4.83395 4.96363 5.32613 5.40414 5.50223 5.72806 6.13810 6.43309 6.79333 6.97037 7.36052 8.87773 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.072069 B = 0.010175 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.423567 B = 2751.282147 C = 2945.481508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.629 5.629 3 C 0.078 3.922 4 C 0.075 3.925 5 H 0.125 0.875 6 C 0.020 3.980 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.006 3.994 10 N -0.928 5.928 11 Si 0.960 3.040 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.278 1.278 15 O -0.345 6.345 16 C 0.629 3.371 17 O -0.583 6.583 18 H 0.078 0.922 19 H 0.108 0.892 20 H 0.065 0.935 21 H 0.131 0.869 22 H 0.102 0.898 23 H 0.045 0.955 24 H -0.005 1.005 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 3.700 -6.739 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.377 5.377 3 C -0.044 4.044 4 C 0.021 3.979 5 H 0.142 0.858 6 C -0.017 4.017 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.785 3.215 12 H -0.186 1.186 13 H -0.207 1.207 14 H -0.204 1.204 15 O -0.254 6.254 16 C 0.383 3.617 17 O -0.474 6.474 18 H 0.096 0.904 19 H 0.127 0.873 20 H 0.083 0.917 21 H 0.148 0.852 22 H 0.120 0.880 23 H 0.063 0.937 24 H 0.013 0.987 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.986 3.081 -6.577 11.555 hybrid contribution 1.000 -0.353 0.407 1.136 sum -7.986 2.728 -6.171 10.454 Atomic orbital electron populations 1.21741 0.73141 1.04415 1.03595 1.48168 1.08579 1.05549 1.75401 1.23165 0.86755 0.88000 1.06501 1.24318 0.96746 0.74050 1.02821 0.85750 1.19367 0.94295 0.97082 0.90955 1.21504 0.96130 1.35330 1.05007 0.92476 1.25832 1.03363 0.95122 0.94910 1.70033 1.37193 1.40837 1.08781 0.85575 0.79400 0.78568 0.77979 1.18562 1.20667 1.20360 1.87337 1.22844 1.29390 1.85849 1.18953 0.80836 0.85830 0.76041 1.90895 1.75005 1.22711 1.58792 0.90366 0.87348 0.91659 0.85157 0.87989 0.93663 0.98702 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.26 11.05 127.77 1.41 3.67 15 2 N -0.63 -19.14 3.36 -976.49 -3.28 -22.42 15 3 C 0.08 2.07 7.34 86.64 0.64 2.71 15 4 C 0.08 2.84 3.76 30.97 0.12 2.95 15 5 H 0.12 4.16 8.14 -2.39 -0.02 4.14 15 6 C 0.02 0.97 4.54 29.85 0.14 1.10 15 7 C -0.54 -29.97 9.03 25.60 0.23 -29.74 15 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 15 9 C 0.01 0.35 5.46 84.65 0.46 0.81 15 10 N -0.93 -54.50 13.29 21.45 0.28 -54.21 15 11 Si 0.96 44.05 29.54 68.60 2.03 46.08 15 12 H -0.26 -11.29 7.11 99.48 0.71 -10.58 15 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 15 O -0.34 -15.71 10.71 -47.37 -0.51 -16.21 15 16 C 0.63 26.39 8.85 129.91 1.15 27.54 15 17 O -0.58 -27.98 17.54 19.65 0.34 -27.64 15 18 H 0.08 1.28 8.14 -2.39 -0.02 1.26 15 19 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 20 H 0.06 1.51 7.92 -2.38 -0.02 1.49 15 21 H 0.13 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.10 2.55 7.74 -2.39 -0.02 2.53 15 23 H 0.05 2.14 8.14 -2.39 -0.02 2.12 15 24 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 15 25 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 Total: -1.00 -72.02 226.32 4.18 -67.84 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: 1.17 Total: -2.48 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 4.14 Total: 9.05 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.00 Total: -76.63 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.16 Total: -43.85 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.02 4.18 -67.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231475933.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.344 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds