Wall clock time and date at job start Mon Mar 30 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.52461 * 2 1 4 4 C 1.36935 * 119.99765 * 300.12438 * 3 2 1 5 5 H 1.08000 * 120.00013 * 359.97438 * 4 3 2 6 6 C 1.38810 * 120.00435 * 180.02562 * 4 3 2 7 7 N 1.31625 * 119.99458 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00551 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47348 * 89.99649 * 8 6 4 10 10 H 1.48501 * 109.47417 * 210.00010 * 8 6 4 11 11 H 1.48500 * 109.47056 * 329.99726 * 8 6 4 12 12 C 1.53186 * 109.51715 * 120.12100 * 2 1 3 13 13 C 1.53181 * 109.02951 * 176.94865 * 12 2 1 14 14 C 1.53090 * 109.16481 * 303.01710 * 13 12 2 15 15 O 1.42905 * 109.41466 * 57.61337 * 14 13 12 16 16 C 1.42905 * 114.09831 * 298.84306 * 15 14 13 17 17 H 1.09003 * 109.47428 * 299.87537 * 1 2 3 18 18 H 1.09006 * 109.46951 * 59.87523 * 1 2 3 19 19 H 1.08998 * 109.47558 * 179.87830 * 1 2 3 20 20 H 0.96998 * 120.00376 * 120.12224 * 3 2 1 21 21 H 0.96999 * 119.99930 * 180.02562 * 7 6 4 22 22 H 1.08997 * 109.53990 * 57.08897 * 12 2 1 23 23 H 1.08995 * 109.54450 * 296.81629 * 12 2 1 24 24 H 1.09007 * 109.52008 * 183.11801 * 13 12 2 25 25 H 1.08996 * 109.52389 * 62.92673 * 13 12 2 26 26 H 1.08998 * 109.48371 * 297.63244 * 14 13 12 27 27 H 1.09004 * 109.48242 * 177.59100 * 14 13 12 28 28 H 1.08994 * 109.48072 * 181.14100 * 16 15 14 29 29 H 1.09001 * 109.47741 * 301.17313 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3808 0.0000 4 6 1.6874 2.2250 -1.0257 5 1 1.0649 1.8727 -1.8349 6 6 2.1517 3.5331 -1.0262 7 7 2.9109 3.9622 -0.0402 8 14 1.6981 4.6849 -2.4250 9 1 0.4371 5.3952 -2.0923 10 1 2.7865 5.6754 -2.6235 11 1 1.5099 3.8998 -3.6714 12 6 2.0418 -0.7246 1.2489 13 6 3.5716 -0.7850 1.1995 14 6 4.0056 -1.4795 -0.0939 15 8 3.4707 -0.7729 -1.2150 16 6 2.0428 -0.7247 -1.2471 17 1 -0.3634 0.5119 0.8911 18 1 -0.3633 0.5158 -0.8889 19 1 -0.3634 -1.0276 -0.0022 20 1 2.5790 1.6970 0.7266 21 1 3.2350 4.8764 -0.0402 22 1 1.6375 -1.7365 1.2746 23 1 1.7268 -0.1818 2.1401 24 1 3.9417 -1.3475 2.0568 25 1 3.9771 0.2264 1.2237 26 1 3.6337 -2.5041 -0.0989 27 1 5.0939 -1.4873 -0.1548 28 1 1.7172 -0.1889 -2.1387 29 1 1.6453 -1.7394 -1.2672 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235402165.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:22 Heat of formation + Delta-G solvation = -64.379952 kcal Electronic energy + Delta-G solvation = -12092.409673 eV Core-core repulsion = 10014.661599 eV Total energy + Delta-G solvation = -2077.748074 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.47878 -36.69091 -34.37729 -32.96778 -30.62633 -27.67003 -26.15788 -25.53231 -22.82714 -20.10293 -19.11953 -17.25668 -16.80376 -16.30291 -15.69562 -15.54553 -15.26790 -14.43733 -13.71499 -13.43429 -13.27237 -12.96295 -12.75582 -12.74749 -12.56628 -12.16476 -12.01100 -11.61147 -11.36636 -11.05288 -10.93209 -10.19727 -8.86870 -7.87459 -5.12366 1.46418 1.48225 1.55909 2.59722 3.19267 3.47625 3.85616 3.96706 4.08214 4.18719 4.26379 4.55160 4.62910 4.70421 4.84608 4.89447 4.94708 5.03137 5.10337 5.15341 5.43321 5.45566 5.56128 5.62573 6.34514 6.54448 7.41057 8.19080 8.41421 9.37025 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049387 B = 0.013654 C = 0.013149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.809057 B = 2050.119013 C = 2128.886198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.150 3.850 3 N -0.720 5.720 4 C -0.214 4.214 5 H 0.073 0.927 6 C -0.083 4.083 7 N -0.974 5.974 8 Si 0.965 3.035 9 H -0.288 1.288 10 H -0.300 1.300 11 H -0.272 1.272 12 C -0.113 4.113 13 C -0.150 4.150 14 C 0.059 3.941 15 O -0.404 6.404 16 C 0.060 3.940 17 H 0.044 0.956 18 H 0.039 0.961 19 H 0.076 0.924 20 H 0.370 0.630 21 H 0.246 0.754 22 H 0.094 0.906 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 -12.426 1.367 12.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.059 3.941 3 N -0.360 5.360 4 C -0.347 4.347 5 H 0.091 0.909 6 C -0.275 4.275 7 N -0.626 5.626 8 Si 0.795 3.205 9 H -0.216 1.216 10 H -0.227 1.227 11 H -0.197 1.197 12 C -0.150 4.150 13 C -0.188 4.188 14 C -0.018 4.018 15 O -0.323 6.323 16 C -0.018 4.018 17 H 0.063 0.937 18 H 0.058 0.942 19 H 0.095 0.905 20 H 0.203 0.797 21 H 0.055 0.945 22 H 0.113 0.887 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.013 -12.297 1.062 12.506 hybrid contribution -0.010 1.245 -0.245 1.269 sum -2.023 -11.052 0.817 11.266 Atomic orbital electron populations 1.22089 0.95927 1.01262 1.01081 1.20618 0.93503 0.85068 0.94867 1.42544 1.60205 1.07360 1.25844 1.19461 1.22932 0.91822 1.00445 0.90882 1.25442 1.01850 0.99307 1.00866 1.69820 1.41616 1.16566 1.34602 0.85246 0.76633 0.78953 0.79655 1.21563 1.22684 1.19750 1.21747 0.95533 1.00967 0.96769 1.22116 0.96518 1.00956 0.99216 1.22678 0.99082 0.94710 0.85305 1.87918 1.21311 1.77232 1.45827 1.23034 0.80747 0.98827 0.99233 0.93726 0.94194 0.90491 0.79739 0.94494 0.88711 0.92218 0.88738 0.94159 0.91219 0.88994 0.91612 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 8.46 71.98 0.61 -4.39 15 2 C 0.15 5.77 0.77 3.69 0.00 5.77 15 3 N -0.72 -36.58 4.78 -302.93 -1.45 -38.03 15 4 C -0.21 -12.04 8.65 84.03 0.73 -11.31 15 5 H 0.07 3.96 6.69 -2.91 -0.02 3.94 15 6 C -0.08 -4.93 5.50 84.86 0.47 -4.47 15 7 N -0.97 -61.52 13.06 21.65 0.28 -61.24 15 8 Si 0.96 47.85 29.55 68.60 2.03 49.88 15 9 H -0.29 -13.97 7.11 99.48 0.71 -13.26 15 10 H -0.30 -15.09 7.11 99.48 0.71 -14.39 15 11 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 12 C -0.11 -3.52 4.85 30.72 0.15 -3.37 15 13 C -0.15 -4.68 5.95 30.68 0.18 -4.50 15 14 C 0.06 1.78 6.84 72.01 0.49 2.27 15 15 O -0.40 -16.30 10.67 -148.98 -1.59 -17.89 15 16 C 0.06 2.24 5.46 72.01 0.39 2.63 15 17 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 18 H 0.04 1.49 7.26 -2.38 -0.02 1.47 15 19 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.37 20.59 6.72 -92.71 -0.62 19.97 15 21 H 0.25 15.18 8.31 -92.71 -0.77 14.41 15 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.09 2.27 8.14 -2.38 -0.02 2.25 15 25 H 0.04 1.58 7.10 -2.39 -0.02 1.56 15 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.09 2.56 8.14 -2.38 -0.02 2.54 15 28 H 0.07 2.72 7.22 -2.39 -0.02 2.70 15 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 Total: -1.00 -67.00 234.29 2.80 -64.20 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.50 Total: 20.42 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 3.02 Total: -17.35 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -1.16 Total: -99.27 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.59 Total: -17.89 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -67.00 2.80 -64.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235402165.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.177 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds