Wall clock time and date at job start Mon Mar 30 2020 02:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48493 * 109.47396 * 240.00413 * 3 2 1 5 5 H 1.48506 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47036 * 120.00071 * 3 2 1 7 7 C 1.38813 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99948 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00291 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47627 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47255 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.83239 * 308.64769 * 12 11 10 14 14 C 1.54813 * 110.90744 * 184.99787 * 12 11 10 15 15 C 1.54098 * 104.30472 * 220.98959 * 14 12 11 16 16 O 1.43744 * 107.29564 * 357.90152 * 15 14 12 17 17 C 1.44373 * 106.97248 * 26.51652 * 16 15 14 18 18 H 0.96998 * 119.99558 * 359.97438 * 1 2 3 19 19 H 0.97005 * 120.00048 * 359.97438 * 9 7 2 20 20 H 1.08999 * 109.47553 * 59.99620 * 10 9 7 21 21 H 1.09005 * 109.47128 * 299.99787 * 10 9 7 22 22 H 1.08993 * 109.46687 * 59.99714 * 11 10 9 23 23 H 1.09005 * 109.46798 * 300.00119 * 11 10 9 24 24 H 1.09002 * 110.48794 * 102.24504 * 14 12 11 25 25 H 1.09002 * 110.48657 * 339.72926 * 14 12 11 26 26 H 1.08999 * 109.88182 * 117.33024 * 15 14 12 27 27 H 1.08997 * 109.87763 * 238.47782 * 15 14 12 28 28 H 1.09002 * 110.62093 * 78.43762 * 17 16 15 29 29 H 1.09000 * 110.61773 * 201.43358 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8288 -6.1447 -0.0005 13 1 2.5730 -6.1622 -0.7967 14 6 0.8573 -7.3435 -0.1259 15 6 1.4186 -8.3925 0.8534 16 8 2.6183 -7.8447 1.4250 17 6 2.4885 -6.4075 1.3798 18 1 -0.4849 0.8401 0.0004 19 1 0.3556 -2.3880 0.0002 20 1 2.6848 -3.7145 0.8894 21 1 2.6847 -3.7145 -0.8906 22 1 0.4368 -4.7621 -0.8896 23 1 0.4375 -4.7617 0.8904 24 1 0.8602 -7.7321 -1.1443 25 1 -0.1509 -7.0497 0.1664 26 1 0.6909 -8.5922 1.6399 27 1 1.6502 -9.3131 0.3177 28 1 1.8438 -6.0547 2.1847 29 1 3.4677 -5.9318 1.4345 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236210061.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:42 Heat of formation + Delta-G solvation = -71.808241 kcal Electronic energy + Delta-G solvation = -11175.714296 eV Core-core repulsion = 9097.644107 eV Total energy + Delta-G solvation = -2078.070189 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.38702 -37.09208 -34.81902 -32.79072 -30.75534 -28.46958 -25.67420 -23.94282 -22.57181 -21.37141 -19.16898 -17.48866 -16.75819 -16.49667 -16.27721 -15.35002 -15.30093 -15.05053 -14.32427 -13.71554 -13.15470 -13.09141 -12.81037 -12.48629 -12.39544 -12.22142 -11.98313 -11.63632 -11.57151 -11.38980 -10.92703 -10.61882 -9.02314 -7.96763 -5.26305 1.46841 1.50314 1.56515 2.55227 3.01480 3.36741 3.60956 3.76540 3.90833 4.17525 4.23976 4.33570 4.49127 4.53844 4.70746 4.79988 4.88568 4.90039 4.91936 5.10669 5.18762 5.33683 5.40622 5.47741 5.92798 6.25894 7.31681 8.07663 8.30989 9.26787 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.101772 B = 0.007046 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 275.058066 B = 3972.798048 C = 4129.286467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.750 5.750 10 C 0.149 3.851 11 C -0.102 4.102 12 C -0.111 4.111 13 H 0.087 0.913 14 C -0.148 4.148 15 C 0.042 3.958 16 O -0.403 6.403 17 C 0.049 3.951 18 H 0.252 0.748 19 H 0.374 0.626 20 H 0.022 0.978 21 H 0.019 0.981 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -14.410 0.348 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.392 5.392 10 C 0.022 3.978 11 C -0.139 4.139 12 C -0.131 4.131 13 H 0.105 0.895 14 C -0.186 4.186 15 C -0.034 4.034 16 O -0.322 6.322 17 C -0.027 4.027 18 H 0.061 0.939 19 H 0.206 0.794 20 H 0.040 0.960 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.705 -14.443 0.433 14.700 hybrid contribution -0.256 1.226 -0.066 1.255 sum 2.449 -13.216 0.366 13.446 Atomic orbital electron populations 1.69813 1.06662 1.26281 1.59324 1.25614 0.96460 1.01242 1.03469 0.85174 0.77212 0.78890 0.78262 1.20295 1.21950 1.20302 1.19634 0.91558 0.85488 1.41648 0.90695 1.42614 1.05702 1.01395 1.89521 1.20868 0.94319 0.84943 0.97634 1.21544 0.97705 0.92516 1.02176 1.22643 0.98038 0.94107 0.98272 0.89491 1.23003 0.99677 0.94540 1.01390 1.23325 0.86710 0.97501 0.95885 1.88815 1.40319 1.19858 1.83249 1.23733 1.01704 0.80889 0.96402 0.93887 0.79449 0.96042 0.96334 0.91657 0.91961 0.89083 0.90029 0.91703 0.88402 0.92135 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.09 13.06 21.65 0.28 -59.81 15 2 C -0.08 -4.41 5.50 84.86 0.47 -3.95 15 3 Si 0.98 46.51 29.55 68.60 2.03 48.54 15 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 15 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 7 C -0.25 -14.40 9.99 84.03 0.84 -13.56 15 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 15 9 N -0.75 -39.18 5.60 -343.46 -1.92 -41.10 15 10 C 0.15 6.00 6.16 86.38 0.53 6.53 15 11 C -0.10 -3.19 4.73 30.59 0.14 -3.05 15 12 C -0.11 -2.81 3.10 -9.41 -0.03 -2.84 15 13 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 14 C -0.15 -2.99 6.59 31.58 0.21 -2.78 15 15 C 0.04 0.84 7.70 72.35 0.56 1.40 15 16 O -0.40 -10.73 11.52 -148.98 -1.72 -12.45 15 17 C 0.05 1.28 6.65 72.75 0.48 1.76 15 18 H 0.25 15.10 8.31 -92.71 -0.77 14.33 15 19 H 0.37 20.59 7.67 -92.70 -0.71 19.88 15 20 H 0.02 0.86 7.73 -2.39 -0.02 0.84 15 21 H 0.02 0.76 8.14 -2.38 -0.02 0.74 15 22 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.06 1.99 7.99 -2.38 -0.02 1.97 15 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.08 1.58 7.86 -2.39 -0.02 1.56 15 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 15 28 H 0.06 1.59 7.93 -2.39 -0.02 1.57 15 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 Total: -1.00 -65.00 243.79 2.28 -62.73 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.41 Total: 18.58 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 3.20 Total: -16.48 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -1.64 Total: -100.91 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.72 Total: -12.45 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -65.00 2.28 -62.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236210061.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.081 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds