Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34634 * 117.00300 * 2 1 4 4 O 1.21511 * 119.99942 * 0.02562 * 3 2 1 5 5 N 1.34769 * 119.99996 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99844 * 180.02562 * 5 3 2 7 7 H 1.08996 * 115.56488 * 9.30813 * 6 5 3 8 8 C 1.53082 * 117.50751 * 223.60528 * 6 5 3 9 9 C 1.53002 * 59.98294 * 252.52444 * 8 6 5 10 10 H 1.09005 * 117.49844 * 252.50419 * 9 8 6 11 11 C 1.50696 * 117.50077 * 107.50603 * 9 8 6 12 12 H 1.08003 * 120.00087 * 291.25272 * 11 9 8 13 13 C 1.37875 * 119.99956 * 111.24685 * 11 9 8 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46845 * 60.00735 * 15 13 11 17 17 H 1.48503 * 109.47399 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47295 * 300.00832 * 15 13 11 19 19 H 1.08999 * 109.46899 * 300.00544 * 1 2 3 20 20 H 1.09002 * 109.46570 * 59.99539 * 1 2 3 21 21 H 1.08996 * 109.47528 * 180.02562 * 1 2 3 22 22 H 0.97001 * 120.00347 * 0.02562 * 5 3 2 23 23 H 1.09003 * 117.48521 * 145.03698 * 8 6 5 24 24 H 1.08994 * 117.51701 * 359.97438 * 8 6 5 25 25 H 0.97000 * 119.99806 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.1996 0.0000 4 8 1.4016 2.2187 0.0005 5 7 3.4092 1.2700 0.0005 6 6 4.0744 2.5754 0.0011 7 1 3.4233 3.4350 0.1601 8 6 5.2717 2.7592 -0.9348 9 6 5.4908 2.6462 0.5752 10 1 5.7714 3.5523 1.1123 11 6 6.0949 1.3680 1.0969 12 1 5.5299 0.4484 1.0580 13 6 7.3690 1.3724 1.6238 14 7 8.0570 2.4922 1.6715 15 14 8.1181 -0.2121 2.2698 16 1 8.1873 -1.2103 1.1725 17 1 9.4862 0.0589 2.7799 18 1 7.2762 -0.7447 3.3711 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 3.9375 0.4565 0.0005 23 1 5.4077 3.7398 -1.3911 24 1 5.5647 1.9089 -1.5506 25 1 7.6679 3.3151 1.3364 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238318141.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = -86.208281 kcal Electronic energy + Delta-G solvation = -11082.669416 eV Core-core repulsion = 8868.141700 eV Total energy + Delta-G solvation = -2214.527716 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.48534 -38.91327 -37.21674 -34.87109 -33.44405 -28.44023 -27.14484 -23.69916 -22.76241 -21.92533 -19.89161 -18.88991 -17.76198 -17.51203 -16.28521 -15.89662 -15.47616 -14.83577 -14.64445 -14.19909 -13.40976 -12.95748 -12.80783 -12.68019 -12.14572 -11.89672 -11.81421 -11.78587 -11.46375 -10.78200 -10.38848 -9.63975 -8.66077 -6.33241 1.20010 1.58733 1.63324 1.66758 1.84073 2.58344 3.00947 3.27564 3.54378 4.13974 4.19440 4.35727 4.36073 4.50619 4.62249 4.77948 4.90254 5.21549 5.32515 5.47764 6.02896 6.13685 6.43433 6.57380 7.26583 7.43939 8.75394 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.051448 B = 0.010463 C = 0.009038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.111066 B = 2675.374326 C = 3097.269592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.377 6.377 3 C 0.645 3.355 4 O -0.613 6.613 5 N -0.659 5.659 6 C 0.076 3.924 7 H 0.120 0.880 8 C -0.201 4.201 9 C -0.026 4.026 10 H 0.056 0.944 11 C -0.583 4.583 12 H 0.061 0.939 13 C -0.024 4.024 14 N -0.931 5.931 15 Si 1.117 2.883 16 H -0.266 1.266 17 H -0.288 1.288 18 H -0.272 1.272 19 H 0.059 0.941 20 H 0.063 0.937 21 H 0.140 0.860 22 H 0.414 0.586 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.782 -6.257 -3.197 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.398 3.602 4 O -0.505 6.505 5 N -0.316 5.316 6 C -0.029 4.029 7 H 0.137 0.863 8 C -0.240 4.240 9 C -0.046 4.046 10 H 0.074 0.926 11 C -0.620 4.620 12 H 0.079 0.921 13 C -0.224 4.224 14 N -0.567 5.567 15 Si 0.938 3.062 16 H -0.191 1.191 17 H -0.213 1.213 18 H -0.197 1.197 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.158 0.842 22 H 0.252 0.748 23 H 0.115 0.885 24 H 0.104 0.896 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.837 -6.447 -2.502 11.221 hybrid contribution -1.236 0.829 -0.761 1.671 sum -10.072 -5.619 -3.264 11.986 Atomic orbital electron populations 1.23535 0.72590 1.05770 1.02610 1.86261 1.26088 1.29736 1.86948 1.18210 0.83535 0.82377 0.76083 1.90903 1.65336 1.35980 1.58311 1.44030 1.02366 1.10190 1.74975 1.21577 0.88743 0.84592 1.07976 0.86253 1.23697 1.02002 1.02016 0.96327 1.20449 0.93297 0.98221 0.92625 0.92621 1.21665 1.02473 0.94194 1.43701 0.92093 1.27289 0.95037 1.05659 0.94388 1.70903 1.40115 1.00420 1.45291 0.82928 0.75417 0.70950 0.76900 1.19123 1.21333 1.19724 0.92188 0.91855 0.84189 0.74849 0.88544 0.89623 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 10.56 113.37 1.20 2.26 15 2 O -0.38 -11.90 10.62 -55.44 -0.59 -12.49 15 3 C 0.64 24.88 8.75 129.79 1.14 26.01 15 4 O -0.61 -26.41 15.70 19.81 0.31 -26.10 15 5 N -0.66 -26.29 5.32 -570.00 -3.03 -29.33 15 6 C 0.08 3.25 6.41 45.02 0.29 3.54 15 7 H 0.12 5.09 7.40 -2.39 -0.02 5.07 15 8 C -0.20 -8.45 10.17 30.62 0.31 -8.14 15 9 C -0.03 -1.28 5.25 -11.54 -0.06 -1.34 15 10 H 0.06 2.90 7.07 -2.38 -0.02 2.88 15 11 C -0.58 -30.68 8.83 25.60 0.23 -30.45 15 12 H 0.06 3.05 6.28 -2.91 -0.02 3.03 15 13 C -0.02 -1.32 5.46 84.65 0.46 -0.85 15 14 N -0.93 -54.72 13.65 21.45 0.29 -54.43 15 15 Si 1.12 47.43 29.90 68.60 2.05 49.48 15 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 17 H -0.29 -12.45 7.11 99.48 0.71 -11.75 15 18 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 19 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.14 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.41 15.91 7.17 -92.71 -0.66 15.24 15 23 H 0.10 3.64 8.14 -2.39 -0.02 3.62 15 24 H 0.09 3.58 8.14 -2.39 -0.02 3.56 15 25 H 0.26 15.40 6.80 -92.71 -0.63 14.77 15 Total: -1.00 -63.96 227.36 3.27 -60.70 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.68 Total: 21.14 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 3.56 Total: -8.97 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.74 Total: -83.76 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.28 Total: -38.59 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.05 Total: 49.48 kcal Total: -63.96 3.27 -60.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238318141.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.512 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds