Wall clock time and date at job start Mon Mar 30 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48503 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47446 * 299.99820 * 3 2 1 6 6 H 1.48500 * 109.47205 * 60.00455 * 3 2 1 7 7 C 1.39943 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00109 * 163.70186 * 7 2 1 9 9 C 1.41276 * 119.99949 * 343.69664 * 7 2 1 10 10 C 1.41021 * 120.66557 * 335.64339 * 9 7 2 11 11 C 1.38204 * 118.21208 * 180.02562 * 10 9 7 12 12 F 1.35111 * 120.27603 * 179.97438 * 11 10 9 13 13 C 1.38846 * 119.44967 * 359.97438 * 11 10 9 14 14 N 1.32056 * 121.32407 * 0.02562 * 13 11 10 15 15 C 1.31725 * 121.96527 * 0.02562 * 14 13 11 16 16 F 1.35095 * 119.81386 * 179.97438 * 15 14 13 17 17 H 0.97008 * 119.99772 * 359.97438 * 1 2 3 18 18 H 1.08008 * 120.89431 * 0.04396 * 10 9 7 19 19 H 1.08001 * 119.34392 * 179.72076 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0081 -1.2120 -0.0005 8 1 3.0556 -1.2307 -0.2630 9 6 1.3443 -2.4110 0.3424 10 6 0.1902 -2.3878 1.1525 11 6 -0.4185 -3.5906 1.4571 12 9 -1.5261 -3.6170 2.2304 13 6 0.1177 -4.7717 0.9619 14 7 1.1997 -4.7702 0.2047 15 6 1.8233 -3.6557 -0.1180 16 9 2.9273 -3.7046 -0.8951 17 1 -0.4850 0.8401 0.0004 18 1 -0.2075 -1.4551 1.5247 19 1 -0.3567 -5.7111 1.2047 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238580746.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:15 Heat of formation + Delta-G solvation = -73.909143 kcal Electronic energy + Delta-G solvation = -10721.762540 eV Core-core repulsion = 8260.847545 eV Total energy + Delta-G solvation = -2460.914995 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 185.035 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -47.88824 -47.44218 -38.14264 -34.44673 -30.88210 -29.34671 -25.98559 -22.43937 -21.55653 -17.89818 -16.66171 -16.54674 -15.86443 -14.99979 -14.81078 -14.23092 -13.34781 -13.32718 -12.82225 -12.00426 -11.82702 -11.73874 -11.39076 -11.23725 -10.76987 -10.42728 -9.67632 -8.59636 -8.42214 -7.64609 -7.13954 -4.80796 2.18426 2.48804 2.90273 2.93954 2.97899 3.67157 4.24054 5.03029 5.15122 5.40318 6.00963 6.21799 6.36004 6.75727 6.99911 7.18593 7.52501 7.59449 8.11036 8.29136 8.34952 9.00686 9.75252 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.043370 B = 0.016423 C = 0.012278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.447961 B = 1704.540348 C = 2279.877273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.071 3.929 3 Si 0.923 3.077 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.427 4.427 8 H 0.095 0.905 9 C 0.069 3.931 10 C -0.165 4.165 11 C 0.061 3.939 12 F -0.154 7.154 13 C -0.045 4.045 14 N -0.469 5.469 15 C 0.164 3.836 16 F -0.134 7.134 17 H 0.290 0.710 18 H 0.146 0.854 19 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 1.764 1.540 2.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.150 4.150 3 Si 0.746 3.254 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.455 4.455 8 H 0.113 0.887 9 C 0.063 3.937 10 C -0.191 4.191 11 C 0.039 3.961 12 F -0.134 7.134 13 C -0.202 4.202 14 N -0.182 5.182 15 C 0.005 3.995 16 F -0.114 7.114 17 H 0.102 0.898 18 H 0.163 0.837 19 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.439 1.139 1.223 1.728 hybrid contribution -0.118 1.451 0.245 1.477 sum 0.321 2.591 1.468 2.995 Atomic orbital electron populations 1.69777 1.07945 1.30500 1.31521 1.26111 0.94936 1.02232 0.91723 0.85995 0.81022 0.79385 0.79013 1.17798 1.19413 1.19208 1.19698 0.98265 0.90240 1.37308 0.88656 1.18047 0.92422 0.92049 0.91186 1.21544 0.99200 0.96473 1.01867 1.18680 0.85746 0.96184 0.95491 1.91365 1.51090 1.97521 1.73375 1.21355 0.97124 0.95837 1.05907 1.66280 1.08265 1.30981 1.12661 1.18290 0.90078 0.90115 1.01007 1.91398 1.50181 1.96981 1.72828 0.89845 0.83663 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.53 10.90 55.55 0.61 -17.93 13 2 C 0.07 1.65 5.20 -17.34 -0.09 1.56 13 3 Si 0.92 17.16 29.59 -169.99 -5.03 12.13 13 4 H -0.25 -4.71 7.11 56.52 0.40 -4.31 13 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 13 6 H -0.27 -4.85 7.11 56.52 0.40 -4.45 13 7 C -0.43 -10.75 8.81 -37.79 -0.33 -11.08 13 8 H 0.10 2.32 7.74 -52.48 -0.41 1.91 13 9 C 0.07 1.81 5.59 -106.61 -0.60 1.22 13 10 C -0.16 -4.16 8.79 -38.54 -0.34 -4.50 13 11 C 0.06 1.44 7.32 -39.37 -0.29 1.15 13 12 F -0.15 -3.41 17.28 2.25 0.04 -3.37 13 13 C -0.05 -1.05 11.16 -17.23 -0.19 -1.24 13 14 N -0.47 -11.85 10.35 -12.79 -0.13 -11.98 13 15 C 0.16 4.29 8.44 -16.52 -0.14 4.15 13 16 F -0.13 -3.40 16.75 2.25 0.04 -3.36 13 17 H 0.29 6.18 8.30 -40.82 -0.34 5.84 13 18 H 0.15 3.69 6.20 -52.48 -0.33 3.36 13 19 H 0.14 2.79 8.06 -52.49 -0.42 2.36 13 LS Contribution 191.79 15.07 2.89 2.89 Total: -1.00 -26.29 191.79 -3.86 -30.15 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -0.29 Total: 0.21 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.98 Total: -8.73 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.47 Total: -29.91 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.08 Total: -6.73 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 2.89 Total: 2.89 kcal Total: -26.29 -3.86 -30.15 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238580746.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.758 kcal (2) G-P(sol) polarization free energy of solvation -26.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds