Wall clock time and date at job start Mon Mar 30 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48503 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47446 * 299.99820 * 3 2 1 6 6 H 1.48500 * 109.47205 * 60.00455 * 3 2 1 7 7 C 1.39943 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00109 * 163.70186 * 7 2 1 9 9 C 1.41276 * 119.99949 * 343.69664 * 7 2 1 10 10 C 1.41021 * 120.66557 * 335.64339 * 9 7 2 11 11 C 1.38204 * 118.21208 * 180.02562 * 10 9 7 12 12 F 1.35111 * 120.27603 * 179.97438 * 11 10 9 13 13 C 1.38846 * 119.44967 * 359.97438 * 11 10 9 14 14 N 1.32056 * 121.32407 * 0.02562 * 13 11 10 15 15 C 1.31725 * 121.96527 * 0.02562 * 14 13 11 16 16 F 1.35095 * 119.81386 * 179.97438 * 15 14 13 17 17 H 0.97008 * 119.99772 * 359.97438 * 1 2 3 18 18 H 1.08008 * 120.89431 * 0.04396 * 10 9 7 19 19 H 1.08001 * 119.34392 * 179.72076 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0081 -1.2120 -0.0005 8 1 3.0556 -1.2307 -0.2630 9 6 1.3443 -2.4110 0.3424 10 6 0.1902 -2.3878 1.1525 11 6 -0.4185 -3.5906 1.4571 12 9 -1.5261 -3.6170 2.2304 13 6 0.1177 -4.7717 0.9619 14 7 1.1997 -4.7702 0.2047 15 6 1.8233 -3.6557 -0.1180 16 9 2.9273 -3.7046 -0.8951 17 1 -0.4850 0.8401 0.0004 18 1 -0.2075 -1.4551 1.5247 19 1 -0.3567 -5.7111 1.2047 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238580746.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:15 Heat of formation + Delta-G solvation = -89.394019 kcal Electronic energy + Delta-G solvation = -10722.434015 eV Core-core repulsion = 8260.847545 eV Total energy + Delta-G solvation = -2461.586470 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 185.035 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -49.72839 -49.41178 -40.05421 -36.29388 -32.78883 -31.25422 -27.87702 -24.35626 -23.46934 -19.76321 -18.60675 -18.44149 -17.74271 -16.83380 -16.56321 -16.13908 -15.20864 -15.07988 -14.65268 -13.82229 -13.69127 -13.58994 -13.27057 -12.82885 -12.55031 -12.01483 -11.40914 -10.52161 -10.34859 -9.55504 -8.92399 -6.72732 0.28287 0.58189 1.38028 1.45420 1.56190 2.12642 2.43037 3.12163 3.23039 3.49294 4.17379 4.30676 4.46780 4.94326 5.08579 5.28516 5.56790 5.70513 6.19598 6.39572 6.45946 7.08231 8.01219 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.043370 B = 0.016423 C = 0.012278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.447961 B = 1704.540348 C = 2279.877273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.036 3.964 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.451 4.451 8 H 0.095 0.905 9 C 0.048 3.952 10 C -0.178 4.178 11 C 0.065 3.935 12 F -0.143 7.143 13 C -0.042 4.042 14 N -0.477 5.477 15 C 0.133 3.867 16 F -0.137 7.137 17 H 0.303 0.697 18 H 0.141 0.859 19 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 2.645 1.801 3.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.183 4.183 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.180 1.180 7 C -0.478 4.478 8 H 0.113 0.887 9 C 0.042 3.958 10 C -0.204 4.204 11 C 0.043 3.957 12 F -0.122 7.122 13 C -0.200 4.200 14 N -0.189 5.189 15 C -0.025 4.025 16 F -0.117 7.117 17 H 0.115 0.885 18 H 0.158 0.842 19 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.300 2.003 1.479 2.508 hybrid contribution -0.165 1.158 0.182 1.184 sum 0.135 3.161 1.661 3.573 Atomic orbital electron populations 1.69777 1.09348 1.32375 1.30655 1.27027 0.95669 1.05204 0.90447 0.84889 0.79331 0.74454 0.79601 1.17759 1.18413 1.18019 1.19981 0.98516 0.91180 1.38169 0.88728 1.18315 0.93064 0.92616 0.91828 1.21566 0.99519 0.96952 1.02363 1.18687 0.85816 0.95979 0.95229 1.91390 1.50394 1.97470 1.72961 1.21917 0.96335 0.97064 1.04646 1.66330 1.08834 1.30729 1.13017 1.18452 0.90931 0.90645 1.02437 1.91368 1.50300 1.97021 1.72973 0.88498 0.84187 0.80626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.57 10.90 21.83 0.24 -37.33 13 2 C 0.04 1.63 5.20 85.25 0.44 2.08 13 3 Si 1.00 33.84 29.59 68.60 2.03 35.87 13 4 H -0.25 -8.54 7.11 99.48 0.71 -7.83 13 5 H -0.26 -8.39 7.11 99.48 0.71 -7.69 13 6 H -0.26 -8.20 7.11 99.48 0.71 -7.49 13 7 C -0.45 -22.77 8.81 23.43 0.21 -22.56 13 8 H 0.09 4.64 7.74 -2.91 -0.02 4.62 13 9 C 0.05 2.54 5.59 -21.15 -0.12 2.42 13 10 C -0.18 -8.96 8.79 22.94 0.20 -8.76 13 11 C 0.06 2.99 7.32 22.41 0.16 3.16 13 12 F -0.14 -6.07 17.28 44.97 0.78 -5.29 13 13 C -0.04 -1.87 11.16 84.80 0.95 -0.92 13 14 N -0.48 -23.76 10.35 -194.39 -2.01 -25.77 13 15 C 0.13 7.01 8.44 85.41 0.72 7.73 13 16 F -0.14 -7.02 16.75 44.97 0.75 -6.27 13 17 H 0.30 12.51 8.30 -92.70 -0.77 11.74 13 18 H 0.14 7.12 6.20 -2.91 -0.02 7.10 13 19 H 0.18 6.48 8.06 -2.91 -0.02 6.45 13 Total: -1.00 -54.41 191.79 5.64 -48.77 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.29 Total: 6.90 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 2.56 Total: -16.87 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -1.77 Total: -63.11 kcal Atomic # 9 Polarization: -13.09 SS G_CDS: 1.53 Total: -11.56 kcal Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal Total: -54.41 5.64 -48.77 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238580746.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.627 kcal (2) G-P(sol) polarization free energy of solvation -54.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds