Wall clock time and date at job start Mon Mar 30 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47169 * 89.99839 * 3 2 1 5 5 H 1.48506 * 109.46990 * 209.99763 * 3 2 1 6 6 H 1.48501 * 109.47272 * 329.99815 * 3 2 1 7 7 C 1.40032 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99646 * 17.46370 * 7 2 1 9 9 C 1.41548 * 120.00133 * 197.46271 * 7 2 1 10 10 C 1.40995 * 120.99959 * 207.47661 * 9 7 2 11 11 C 1.38000 * 118.89280 * 179.77956 * 10 9 7 12 12 F 1.35099 * 119.50971 * 180.25045 * 11 10 9 13 13 N 1.32231 * 120.98150 * 0.50839 * 11 10 9 14 14 C 1.32220 * 122.24544 * 359.73722 * 13 11 10 15 15 F 1.35111 * 119.50920 * 180.02562 * 14 13 11 16 16 C 1.37997 * 120.98491 * 0.02562 * 14 13 11 17 17 H 0.96997 * 119.99747 * 175.45705 * 1 2 3 18 18 H 1.07997 * 120.55181 * 0.02562 * 10 9 7 19 19 H 1.08004 * 120.55655 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 1.4000 5 1 3.5390 1.4402 -0.7000 6 1 1.4389 2.6527 -0.7001 7 6 2.0076 -1.2127 0.0005 8 1 1.5049 -2.1265 -0.2797 9 6 3.3742 -1.2408 0.3684 10 6 4.2416 -2.2317 -0.1352 11 6 5.5670 -2.2153 0.2486 12 9 6.4102 -3.1559 -0.2305 13 7 6.0229 -1.2958 1.0823 14 6 5.2459 -0.3506 1.5836 15 9 5.7702 0.5620 2.4308 16 6 3.9075 -0.2824 1.2545 17 1 -0.4849 -0.8374 -0.0665 18 1 3.8756 -2.9885 -0.8133 19 1 3.2791 0.4923 1.6684 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238587379.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:12 Heat of formation + Delta-G solvation = -86.841955 kcal Electronic energy + Delta-G solvation = -10708.796828 eV Core-core repulsion = 8247.321024 eV Total energy + Delta-G solvation = -2461.475804 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 185.035 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -49.99120 -49.92413 -40.33180 -36.30575 -33.52870 -31.22607 -28.01370 -24.57962 -23.25578 -20.78578 -18.78663 -18.57176 -17.43986 -17.30789 -16.78138 -16.36954 -15.57341 -15.53715 -15.13745 -14.14287 -13.94508 -13.43305 -13.28087 -12.73407 -12.11914 -11.64586 -11.37407 -10.75293 -10.45559 -9.74554 -9.58442 -7.05629 0.09690 0.36818 1.35811 1.49872 1.73085 2.06204 2.31683 2.32438 3.03830 3.41215 4.10757 4.17366 4.33171 4.79134 4.98783 5.23666 5.30809 5.60077 6.02715 6.09474 6.38990 6.68287 7.74449 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.044771 B = 0.017354 C = 0.013457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.255902 B = 1613.079822 C = 2080.251814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.023 3.977 3 Si 1.090 2.910 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.493 4.493 8 H 0.080 0.920 9 C 0.129 3.871 10 C -0.289 4.289 11 C 0.340 3.660 12 F -0.122 7.122 13 N -0.655 5.655 14 C 0.351 3.649 15 F -0.121 7.121 16 C -0.328 4.328 17 H 0.292 0.708 18 H 0.144 0.856 19 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 1.139 -0.174 2.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.198 4.198 3 Si 0.911 3.089 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.523 4.523 8 H 0.098 0.902 9 C 0.121 3.879 10 C -0.313 4.313 11 C 0.193 3.807 12 F -0.101 7.101 13 N -0.383 5.383 14 C 0.202 3.798 15 F -0.100 7.100 16 C -0.352 4.352 17 H 0.104 0.896 18 H 0.162 0.838 19 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.290 2.673 0.112 4.241 hybrid contribution -0.529 -2.069 -0.155 2.141 sum 2.761 0.605 -0.043 2.826 Atomic orbital electron populations 1.70540 1.08394 1.33857 1.28982 1.28274 0.95707 1.06517 0.89294 0.83366 0.74905 0.71066 0.79606 1.17829 1.19055 1.19349 1.20846 0.94242 0.97511 1.39653 0.90157 1.17653 0.93299 0.89206 0.87754 1.21760 0.91283 1.07880 1.10395 1.17302 0.85600 0.85851 0.91932 1.91530 1.72175 1.60944 1.85436 1.65705 1.42323 1.09505 1.20783 1.17200 0.87738 0.86012 0.88807 1.91535 1.87997 1.62855 1.67589 1.21825 0.94424 1.09238 1.09751 0.89591 0.83844 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.76 13.65 21.84 0.30 -37.47 13 2 C 0.02 1.07 5.44 85.29 0.46 1.54 13 3 Si 1.09 42.95 24.90 68.60 1.71 44.65 13 4 H -0.25 -9.29 6.43 99.48 0.64 -8.65 13 5 H -0.27 -10.66 6.99 99.48 0.70 -9.97 13 6 H -0.27 -9.94 7.11 99.48 0.71 -9.23 13 7 C -0.49 -23.59 9.50 23.52 0.22 -23.36 13 8 H 0.08 3.91 8.06 -2.91 -0.02 3.88 13 9 C 0.13 6.01 5.18 -21.11 -0.11 5.90 13 10 C -0.29 -12.70 9.87 22.89 0.23 -12.48 13 11 C 0.34 15.12 8.39 84.58 0.71 15.83 13 12 F -0.12 -4.95 17.28 44.97 0.78 -4.17 13 13 N -0.66 -30.67 10.36 -198.55 -2.06 -32.73 13 14 C 0.35 15.92 8.39 84.58 0.71 16.63 13 15 F -0.12 -5.03 17.28 44.97 0.78 -4.25 13 16 C -0.33 -14.87 7.35 22.89 0.17 -14.71 13 17 H 0.29 13.44 8.72 -92.71 -0.81 12.63 13 18 H 0.14 5.70 8.06 -2.91 -0.02 5.68 13 19 H 0.14 6.05 4.35 -2.91 -0.01 6.03 13 Total: -1.00 -49.29 187.32 5.07 -44.22 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 1.17 Total: 0.38 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 2.39 Total: -10.64 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.76 Total: -70.19 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 1.55 Total: -8.42 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.71 Total: 44.65 kcal Total: -49.29 5.07 -44.22 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587379.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.621 kcal (2) G-P(sol) polarization free energy of solvation -49.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds