Wall clock time and date at job start Mon Mar 30 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86793 * 119.99997 * 2 1 4 4 H 1.48506 * 109.47147 * 274.72316 * 3 2 1 5 5 H 1.48498 * 109.47358 * 34.72860 * 3 2 1 6 6 H 1.48505 * 109.47231 * 154.72782 * 3 2 1 7 7 C 1.39919 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99544 * 163.61360 * 7 2 1 9 9 C 1.41339 * 120.00770 * 343.62117 * 7 2 1 10 10 C 1.40733 * 120.62637 * 155.72275 * 9 7 2 11 11 N 1.31486 * 120.48946 * 180.02562 * 10 9 7 12 12 C 1.32262 * 121.95745 * 359.97438 * 11 10 9 13 13 F 1.35104 * 119.39313 * 179.97438 * 12 11 10 14 14 C 1.39223 * 121.21723 * 359.97438 * 12 11 10 15 15 F 1.35101 * 120.32026 * 180.02562 * 14 12 11 16 16 C 1.38041 * 119.36216 * 0.02562 * 14 12 11 17 17 H 0.96999 * 120.00345 * 0.02562 * 1 2 3 18 18 H 1.08008 * 119.75598 * 359.73664 * 10 9 7 19 19 H 1.07994 * 120.89291 * 180.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3902 2.1040 -1.3954 5 1 1.4935 2.6217 0.7976 6 1 3.5865 1.4133 0.5977 7 6 2.0080 -1.2118 0.0005 8 1 3.0552 -1.2309 -0.2634 9 6 1.3444 -2.4109 0.3462 10 6 1.8229 -3.6527 -0.1116 11 7 1.2031 -4.7665 0.2113 12 6 0.1193 -4.7702 0.9693 13 9 -0.4765 -5.9452 1.2687 14 6 -0.4189 -3.5855 1.4645 15 9 -1.5265 -3.6104 2.2377 16 6 0.1901 -2.3852 1.1579 17 1 -0.4850 0.8400 -0.0004 18 1 2.7030 -3.6907 -0.7365 19 1 -0.2061 -1.4517 1.5291 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238587721.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:19 Heat of formation + Delta-G solvation = -88.859046 kcal Electronic energy + Delta-G solvation = -10672.522151 eV Core-core repulsion = 8210.958880 eV Total energy + Delta-G solvation = -2461.563272 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 185.035 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -50.14713 -49.21830 -40.13866 -36.14531 -32.66252 -31.57138 -27.57578 -24.42293 -23.53464 -19.79112 -18.69446 -18.29387 -17.77533 -17.20669 -16.63859 -15.83826 -15.46990 -15.10758 -14.37374 -13.91647 -13.79079 -13.71958 -13.17999 -12.81173 -12.40201 -11.99098 -11.30378 -10.52811 -10.34591 -9.62265 -8.89270 -6.64877 0.27009 0.60305 1.43315 1.49792 1.61320 2.14956 2.45397 2.94493 3.30885 3.57533 4.00942 4.49839 4.49959 5.00130 5.05505 5.28883 5.56648 5.78577 6.24646 6.44012 6.50731 7.14187 8.04628 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.071137 B = 0.012728 C = 0.011091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.510170 B = 2199.431763 C = 2523.879379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.031 3.969 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.248 1.248 7 C -0.435 4.435 8 H 0.114 0.886 9 C 0.053 3.947 10 C 0.006 3.994 11 N -0.473 5.473 12 C 0.079 3.921 13 F -0.143 7.143 14 C 0.053 3.947 15 F -0.147 7.147 16 C -0.178 4.178 17 H 0.301 0.699 18 H 0.176 0.824 19 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 4.272 0.162 5.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.462 4.462 8 H 0.132 0.868 9 C 0.047 3.953 10 C -0.160 4.160 11 N -0.185 5.185 12 C -0.072 4.072 13 F -0.123 7.123 14 C 0.030 3.970 15 F -0.126 7.126 16 C -0.204 4.204 17 H 0.113 0.887 18 H 0.193 0.807 19 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.910 3.545 -0.074 4.587 hybrid contribution -0.801 0.908 0.526 1.320 sum 2.109 4.453 0.452 4.948 Atomic orbital electron populations 1.69810 1.09678 1.32354 1.30534 1.27138 0.95552 1.05666 0.90526 0.84900 0.79236 0.74283 0.79763 1.18264 1.19338 1.17142 1.20156 0.99027 0.90451 1.36545 0.86770 1.18729 0.91442 0.95202 0.89892 1.22859 1.02854 0.85814 1.04428 1.66400 1.06391 1.34321 1.11387 1.17556 0.98426 0.79799 1.11417 1.91395 1.82270 1.46257 1.92399 1.18428 0.86789 0.94761 0.96979 1.91369 1.50668 1.97425 1.73175 1.21655 1.00703 0.95098 1.02907 0.88718 0.80733 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.41 10.90 21.82 0.24 -36.17 13 2 C 0.03 1.30 5.20 85.25 0.44 1.74 13 3 Si 1.00 31.24 29.59 68.60 2.03 33.27 13 4 H -0.26 -7.79 7.11 99.48 0.71 -7.08 13 5 H -0.27 -8.25 7.11 99.48 0.71 -7.54 13 6 H -0.25 -7.46 7.11 99.48 0.71 -6.76 13 7 C -0.43 -19.40 9.08 23.44 0.21 -19.18 13 8 H 0.11 4.54 7.90 -2.91 -0.02 4.51 13 9 C 0.05 2.56 5.59 -21.19 -0.12 2.45 13 10 C 0.01 0.27 10.97 85.35 0.94 1.20 13 11 N -0.47 -23.63 10.35 -194.40 -2.01 -25.64 13 12 C 0.08 4.07 8.42 84.87 0.71 4.78 13 13 F -0.14 -7.13 17.20 44.97 0.77 -6.36 13 14 C 0.05 2.71 7.33 22.46 0.16 2.87 13 15 F -0.15 -7.15 17.19 44.97 0.77 -6.38 13 16 C -0.18 -9.00 8.78 22.94 0.20 -8.80 13 17 H 0.30 12.19 8.30 -92.71 -0.77 11.42 13 18 H 0.18 6.83 8.06 -2.91 -0.02 6.81 13 19 H 0.14 7.12 6.20 -2.91 -0.02 7.10 13 Total: -1.00 -53.39 192.37 5.64 -47.74 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.29 Total: 8.47 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 2.55 Total: -14.94 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -1.77 Total: -61.81 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 1.55 Total: -12.74 kcal Atomic # 14 Polarization: 31.24 SS G_CDS: 2.03 Total: 33.27 kcal Total: -53.39 5.64 -47.74 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587721.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.116 kcal (2) G-P(sol) polarization free energy of solvation -53.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds