Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00488 * 3 2 1 5 5 H 1.48498 * 109.46721 * 29.99904 * 3 2 1 6 6 H 1.48497 * 109.47362 * 149.99848 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.50703 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.34459 * 125.76566 * 99.71910 * 12 9 7 14 14 C 1.41448 * 106.85737 * 179.85556 * 13 12 9 15 15 C 1.34780 * 106.81338 * 0.40554 * 14 13 12 16 16 F 1.35108 * 125.80653 * 179.77762 * 15 14 13 17 17 O 1.34286 * 108.38388 * 359.75075 * 15 14 13 18 18 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 19 19 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 20 20 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 21 21 H 1.08001 * 126.57198 * 359.97438 * 13 12 9 22 22 H 1.08002 * 126.58731 * 180.12039 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.6009 -4.3617 1.0759 14 6 3.5267 -5.3307 0.6235 15 6 3.6730 -5.1409 -0.7028 16 9 4.4752 -5.8576 -1.5202 17 8 2.8853 -4.1185 -1.0737 18 1 -0.4850 0.8401 0.0004 19 1 -0.3005 -1.8576 -1.1911 20 1 0.9651 -2.5260 -2.0381 21 1 2.2562 -4.2252 2.0903 22 1 4.0245 -6.0761 1.2261 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238592673.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = -54.386759 kcal Electronic energy + Delta-G solvation = -10963.026718 eV Core-core repulsion = 8626.418582 eV Total energy + Delta-G solvation = -2336.608136 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -50.10503 -43.49919 -36.78419 -34.11846 -33.37550 -29.93310 -27.81097 -24.34205 -23.07915 -21.41768 -19.25047 -18.77928 -17.83758 -17.17053 -16.37735 -16.12590 -15.60128 -15.45241 -14.72654 -13.90572 -13.69928 -13.45182 -13.31865 -12.88178 -12.70916 -12.07927 -11.95081 -10.94721 -10.79473 -9.48104 -9.15735 -8.20615 -6.47613 0.64364 1.37983 1.39930 1.42664 1.50743 1.63341 2.35303 2.98252 3.44872 3.95945 4.07406 4.53668 4.80179 4.89959 5.06176 5.27577 5.55243 5.57379 5.85764 6.11524 6.47813 6.75324 6.98172 7.28285 8.74454 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.060513 B = 0.011358 C = 0.010789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.596844 B = 2464.617568 C = 2594.602843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.030 3.970 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.574 4.574 8 H 0.047 0.953 9 C 0.280 3.720 10 H 0.059 0.941 11 N -0.844 5.844 12 C 0.052 3.948 13 C -0.224 4.224 14 C -0.181 4.181 15 C 0.099 3.901 16 F -0.087 7.087 17 O -0.203 6.203 18 H 0.273 0.727 19 H 0.354 0.646 20 H 0.320 0.680 21 H 0.173 0.827 22 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -5.495 1.203 7.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.171 4.171 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.613 4.613 8 H 0.065 0.935 9 C 0.170 3.830 10 H 0.077 0.923 11 N -0.373 5.373 12 C 0.001 3.999 13 C -0.243 4.243 14 C -0.201 4.201 15 C 0.033 3.967 16 F -0.066 7.066 17 O -0.103 6.103 18 H 0.083 0.917 19 H 0.170 0.830 20 H 0.129 0.871 21 H 0.190 0.810 22 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.286 -6.037 1.168 7.495 hybrid contribution 0.937 1.644 -0.486 1.953 sum 5.223 -4.393 0.682 6.859 Atomic orbital electron populations 1.69797 1.06793 1.28613 1.49589 1.25683 0.95831 1.02275 0.93346 0.85455 0.78579 0.78714 0.78286 1.20193 1.20068 1.19768 1.21932 0.93501 0.92009 1.53855 0.93458 1.17667 0.87143 0.85645 0.92556 0.92290 1.59441 1.18218 1.55684 1.04002 1.23360 0.96060 0.97232 0.83213 1.21646 1.03461 0.98652 1.00557 1.21697 1.03360 1.03887 0.91159 1.18355 0.97627 0.92792 0.87922 1.91636 1.68449 1.72620 1.73902 1.83887 1.46958 1.40408 1.39058 0.91750 0.83015 0.87103 0.80974 0.78867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.12 11.54 21.45 0.25 -47.87 14 2 C 0.03 1.57 5.38 84.66 0.46 2.03 14 3 Si 0.96 41.63 29.54 68.60 2.03 43.66 14 4 H -0.28 -11.76 7.11 99.48 0.71 -11.06 14 5 H -0.28 -11.48 7.11 99.48 0.71 -10.78 14 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 14 7 C -0.57 -30.58 8.71 25.60 0.22 -30.36 14 8 H 0.05 2.58 7.74 -2.91 -0.02 2.56 14 9 C 0.28 13.93 3.17 43.42 0.14 14.07 14 10 H 0.06 3.08 8.13 -2.39 -0.02 3.06 14 11 N -0.84 -40.78 9.18 -174.95 -1.61 -42.39 14 12 C 0.05 2.31 6.08 24.82 0.15 2.46 14 13 C -0.22 -8.33 10.80 22.20 0.24 -8.09 14 14 C -0.18 -5.87 10.92 22.27 0.24 -5.63 14 15 C 0.10 3.71 9.26 67.03 0.62 4.33 14 16 F -0.09 -2.95 17.32 44.97 0.78 -2.17 14 17 O -0.20 -8.95 10.53 -3.73 -0.04 -8.99 14 18 H 0.27 13.65 8.31 -92.70 -0.77 12.88 14 19 H 0.35 17.81 7.08 -89.69 -0.63 17.17 14 20 H 0.32 15.24 8.88 -89.70 -0.80 14.44 14 21 H 0.17 5.55 8.06 -2.91 -0.02 5.53 14 22 H 0.19 4.51 8.06 -2.91 -0.02 4.48 14 Total: -1.00 -54.97 210.01 3.31 -51.67 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.17 Total: 27.27 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 2.07 Total: -21.19 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -1.36 Total: -90.26 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.04 Total: -8.99 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -54.97 3.31 -51.67 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238592673.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.722 kcal (2) G-P(sol) polarization free energy of solvation -54.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds