Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 11 11 N 1.46906 * 109.46982 * 59.99808 * 9 7 2 12 12 C 1.50698 * 109.47576 * 180.02562 * 9 7 2 13 13 O 1.34454 * 125.80386 * 285.02809 * 12 9 7 14 14 C 1.34287 * 109.48243 * 179.97438 * 13 12 9 15 15 C 1.34526 * 108.46100 * 359.97438 * 14 13 12 16 16 C 1.34632 * 125.81071 * 104.71305 * 12 9 7 17 17 F 1.35099 * 126.58937 * 359.96482 * 16 12 9 18 18 H 0.96991 * 120.00258 * 0.02562 * 1 2 3 19 19 H 1.00896 * 111.00309 * 60.00059 * 11 9 7 20 20 H 1.00902 * 110.99923 * 183.96223 * 11 9 7 21 21 H 1.08004 * 125.76744 * 179.97438 * 14 13 12 22 22 H 1.08002 * 126.57354 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6804 -0.8889 11 7 4.0008 -0.5012 1.2006 12 6 4.0140 -2.6148 0.0010 13 8 4.0093 -3.4509 1.0540 14 6 4.5308 -4.6333 0.6893 15 6 4.8758 -4.5645 -0.6092 16 6 4.5385 -3.2648 -1.0550 17 9 4.7105 -2.7705 -2.3005 18 1 -0.4850 0.8399 -0.0004 19 1 3.6770 -0.9585 2.0397 20 1 5.0073 -0.4310 1.1924 21 1 4.6527 -5.4941 1.3301 22 1 5.3214 -5.3517 -1.1992 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238600333.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = -24.292760 kcal Electronic energy + Delta-G solvation = -11146.008279 eV Core-core repulsion = 8810.705116 eV Total energy + Delta-G solvation = -2335.303162 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -48.08927 -42.09361 -34.96486 -32.23454 -31.84331 -28.76852 -26.22443 -22.51949 -21.39047 -19.89590 -17.31853 -17.02656 -15.79244 -15.28086 -14.64062 -14.59586 -14.21914 -14.07092 -13.58058 -12.65272 -12.45175 -11.85863 -11.45298 -10.84853 -10.40000 -10.17201 -9.38871 -9.31931 -8.61862 -7.88084 -7.37680 -6.07063 -4.19717 2.09459 2.80751 3.38149 3.51339 3.58721 3.87999 4.64717 4.72441 5.16514 5.23353 5.50542 5.70278 5.81615 5.99929 6.43256 6.62833 6.99539 7.35809 7.47682 8.03266 8.21957 8.56908 8.90110 9.53731 11.02302 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.054538 B = 0.013984 C = 0.013570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.281135 B = 2001.847129 C = 2062.853963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.089 3.911 3 Si 0.866 3.134 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.192 1.192 7 C -0.530 4.530 8 H 0.072 0.928 9 C 0.261 3.739 10 H 0.070 0.930 11 N -0.830 5.830 12 C 0.000 4.000 13 O -0.154 6.154 14 C -0.045 4.045 15 C -0.233 4.233 16 C -0.032 4.032 17 F -0.125 7.125 18 H 0.266 0.734 19 H 0.338 0.662 20 H 0.311 0.689 21 H 0.204 0.796 22 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.127 -5.751 1.558 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.116 4.116 3 Si 0.692 3.308 4 H -0.221 1.221 5 H -0.227 1.227 6 H -0.114 1.114 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.151 3.849 10 H 0.087 0.913 11 N -0.358 5.358 12 C -0.055 4.055 13 O -0.049 6.049 14 C -0.112 4.112 15 C -0.253 4.253 16 C -0.053 4.053 17 F -0.104 7.104 18 H 0.075 0.925 19 H 0.152 0.848 20 H 0.123 0.877 21 H 0.220 0.780 22 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.454 -4.920 1.560 10.771 hybrid contribution 0.731 -0.381 -0.395 0.914 sum 10.184 -5.301 1.166 11.540 Atomic orbital electron populations 1.69935 1.06930 1.27630 1.48442 1.24935 0.94595 1.00044 0.92025 0.87196 0.84592 0.80883 0.78120 1.22072 1.22716 1.11370 1.20639 0.86582 0.95036 1.54491 0.90970 1.18448 0.96959 0.77791 0.91719 0.91266 1.59991 1.13038 1.57033 1.05777 1.24587 0.99832 0.96587 0.84446 1.84159 1.63619 1.20747 1.36412 1.23747 1.02467 0.89009 0.96000 1.21663 1.09487 0.97609 0.96564 1.17406 1.11753 0.94119 0.82043 1.91408 1.94423 1.87382 1.37163 0.92492 0.84845 0.87715 0.77958 0.83132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.96 55.43 0.77 -26.83 14 2 C 0.09 2.59 5.47 -17.82 -0.10 2.49 14 3 Si 0.87 21.39 26.94 -169.99 -4.58 16.81 14 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 14 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 14 6 H -0.19 -4.35 5.17 56.52 0.29 -4.06 14 7 C -0.53 -15.04 9.29 -34.44 -0.32 -15.36 14 8 H 0.07 2.27 7.98 -52.49 -0.42 1.85 14 9 C 0.26 6.13 2.58 -70.02 -0.18 5.95 14 10 H 0.07 1.67 7.51 -51.93 -0.39 1.28 14 11 N -0.83 -17.13 5.82 -6.65 -0.04 -17.17 14 12 C 0.00 0.00 6.07 -35.59 -0.22 -0.21 14 13 O -0.15 -2.98 10.61 5.34 0.06 -2.92 14 14 C -0.04 -0.68 12.08 29.42 0.36 -0.32 14 15 C -0.23 -3.83 10.91 -39.66 -0.43 -4.26 14 16 C -0.03 -0.65 7.97 -39.62 -0.32 -0.97 14 17 F -0.12 -2.63 17.28 2.25 0.04 -2.59 14 18 H 0.27 7.71 8.31 -40.82 -0.34 7.37 14 19 H 0.34 6.81 8.94 -39.29 -0.35 6.46 14 20 H 0.31 5.49 9.06 -39.29 -0.36 5.14 14 21 H 0.20 2.03 8.06 -52.48 -0.42 1.61 14 22 H 0.15 1.99 8.06 -52.49 -0.42 1.56 14 LS Contribution 206.28 15.07 3.11 3.11 Total: -1.00 -31.74 206.28 -3.45 -35.19 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -1.61 Total: 7.08 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.21 Total: -12.68 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.73 Total: -44.00 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.06 Total: -2.92 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.58 Total: 16.81 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -31.74 -3.45 -35.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238600333.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.897 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds