Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47142 * 299.99914 * 3 2 1 6 6 H 1.48499 * 109.47302 * 60.00046 * 3 2 1 7 7 C 1.37879 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99937 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46760 * 60.00818 * 9 7 2 11 11 N 1.46900 * 109.47611 * 300.01052 * 9 7 2 12 12 C 1.50697 * 109.47139 * 180.02562 * 9 7 2 13 13 C 1.34535 * 125.77408 * 260.00456 * 12 9 7 14 14 C 1.41479 * 106.85557 * 179.73554 * 13 12 9 15 15 F 1.35100 * 126.58910 * 179.97438 * 14 13 12 16 16 C 1.34636 * 106.82006 * 0.02562 * 14 13 12 17 17 O 1.34293 * 125.76884 * 79.69774 * 12 9 7 18 18 H 0.96999 * 120.00515 * 359.97438 * 1 2 3 19 19 H 1.00905 * 110.99281 * 299.99885 * 11 9 7 20 20 H 1.00900 * 111.00309 * 63.94768 * 11 9 7 21 21 H 1.07997 * 126.56825 * 359.71496 * 13 12 9 22 22 H 1.07994 * 125.80743 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 0.4067 -2.5772 1.1990 12 6 2.2303 -3.6446 -0.0005 13 6 2.5974 -4.3654 -1.0755 14 6 3.5323 -5.3270 -0.6248 15 9 4.1562 -6.2586 -1.3786 16 6 3.6799 -5.1359 0.6997 17 8 2.8886 -4.1146 1.0715 18 1 -0.4851 0.8400 0.0004 19 1 0.9650 -2.5260 2.0380 20 1 -0.3006 -1.8577 1.1909 21 1 2.2456 -4.2353 -2.0882 22 1 4.3245 -5.7059 1.3523 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238616628.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = -40.267039 kcal Electronic energy + Delta-G solvation = -10929.503807 eV Core-core repulsion = 8593.507948 eV Total energy + Delta-G solvation = -2335.995859 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -48.29930 -41.88307 -34.89036 -32.05670 -31.41775 -28.52911 -25.98927 -22.77531 -21.20137 -19.92094 -17.09770 -16.65376 -15.71720 -15.14292 -15.07049 -14.49778 -14.26907 -14.07068 -12.93017 -12.83066 -12.04430 -11.47177 -11.28450 -11.04325 -10.84380 -10.13653 -10.13357 -9.04831 -8.81466 -7.88889 -7.35930 -6.24989 -4.42700 2.26779 3.05753 3.15459 3.24545 3.30295 3.63253 4.23191 4.76126 4.99066 5.35958 5.53117 6.04487 6.32018 6.45067 6.71600 7.01576 7.18138 7.60473 7.73752 7.89357 8.46020 8.73157 8.95056 9.29790 10.73232 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.062114 B = 0.011160 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.672259 B = 2508.325819 C = 2676.991755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.276 3.724 10 H 0.074 0.926 11 N -0.850 5.850 12 C 0.098 3.902 13 C -0.275 4.275 14 C 0.002 3.998 15 F -0.132 7.132 16 C -0.099 4.099 17 O -0.153 6.153 18 H 0.269 0.731 19 H 0.320 0.680 20 H 0.361 0.639 21 H 0.152 0.848 22 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 -4.999 0.863 6.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.134 4.134 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.079 0.921 9 C 0.166 3.834 10 H 0.091 0.909 11 N -0.381 5.381 12 C 0.046 3.954 13 C -0.295 4.295 14 C -0.018 4.018 15 F -0.111 7.111 16 C -0.168 4.168 17 O -0.048 6.048 18 H 0.079 0.921 19 H 0.129 0.871 20 H 0.178 0.822 21 H 0.169 0.831 22 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.631 -5.522 0.842 6.662 hybrid contribution 1.119 1.532 -0.262 1.915 sum 4.750 -3.990 0.581 6.231 Atomic orbital electron populations 1.69730 1.05894 1.27653 1.49698 1.24999 0.95030 0.99551 0.93848 0.86326 0.80110 0.82562 0.77817 1.19597 1.20644 1.20729 1.21776 0.93994 0.90498 1.52991 0.92104 1.17858 0.87137 0.85165 0.93220 0.90886 1.59444 1.18410 1.56273 1.03938 1.23571 0.93887 0.95245 0.82698 1.21338 1.05838 1.00867 1.01437 1.17720 1.00597 0.93629 0.89889 1.91389 1.81019 1.63017 1.75667 1.23537 1.02618 0.95940 0.94671 1.84175 1.45385 1.39222 1.36061 0.92121 0.87104 0.82164 0.83067 0.78246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 11.54 55.43 0.64 -22.96 14 2 C 0.07 1.80 5.38 -17.82 -0.10 1.70 14 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 14 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 14 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 14 7 C -0.55 -14.60 8.71 -34.44 -0.30 -14.90 14 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 14 9 C 0.28 6.80 3.17 -70.02 -0.22 6.58 14 10 H 0.07 1.90 8.13 -51.93 -0.42 1.48 14 11 N -0.85 -20.02 9.18 -6.65 -0.06 -20.08 14 12 C 0.10 2.20 6.08 -35.62 -0.22 1.99 14 13 C -0.27 -5.71 10.80 -39.66 -0.43 -6.14 14 14 C 0.00 0.04 8.08 -39.62 -0.32 -0.28 14 15 F -0.13 -2.39 17.32 2.25 0.04 -2.35 14 16 C -0.10 -1.75 12.10 29.46 0.36 -1.40 14 17 O -0.15 -3.21 10.54 5.34 0.06 -3.15 14 18 H 0.27 6.76 8.31 -40.82 -0.34 6.42 14 19 H 0.32 7.29 8.88 -39.29 -0.35 6.94 14 20 H 0.36 8.89 7.08 -39.29 -0.28 8.61 14 21 H 0.15 2.91 8.06 -52.49 -0.42 2.49 14 22 H 0.20 2.59 8.06 -52.49 -0.42 2.17 14 LS Contribution 210.01 15.07 3.16 3.16 Total: -1.00 -26.78 210.01 -3.84 -30.62 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -1.44 Total: 11.82 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.23 Total: -12.44 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.58 Total: -43.04 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.06 Total: -3.15 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -26.78 -3.84 -30.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238616628.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.647 kcal (2) G-P(sol) polarization free energy of solvation -26.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds