Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47142 * 299.99914 * 3 2 1 6 6 H 1.48499 * 109.47302 * 60.00046 * 3 2 1 7 7 C 1.37879 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99937 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46760 * 60.00818 * 9 7 2 11 11 N 1.46900 * 109.47611 * 300.01052 * 9 7 2 12 12 C 1.50697 * 109.47139 * 180.02562 * 9 7 2 13 13 C 1.34535 * 125.77408 * 260.00456 * 12 9 7 14 14 C 1.41479 * 106.85557 * 179.73554 * 13 12 9 15 15 F 1.35100 * 126.58910 * 179.97438 * 14 13 12 16 16 C 1.34636 * 106.82006 * 0.02562 * 14 13 12 17 17 O 1.34293 * 125.76884 * 79.69774 * 12 9 7 18 18 H 0.96999 * 120.00515 * 359.97438 * 1 2 3 19 19 H 1.00905 * 110.99281 * 299.99885 * 11 9 7 20 20 H 1.00900 * 111.00309 * 63.94768 * 11 9 7 21 21 H 1.07997 * 126.56825 * 359.71496 * 13 12 9 22 22 H 1.07994 * 125.80743 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 0.4067 -2.5772 1.1990 12 6 2.2303 -3.6446 -0.0005 13 6 2.5974 -4.3654 -1.0755 14 6 3.5323 -5.3270 -0.6248 15 9 4.1562 -6.2586 -1.3786 16 6 3.6799 -5.1359 0.6997 17 8 2.8886 -4.1146 1.0715 18 1 -0.4851 0.8400 0.0004 19 1 0.9650 -2.5260 2.0380 20 1 -0.3006 -1.8577 1.1909 21 1 2.2456 -4.2353 -2.0882 22 1 4.3245 -5.7059 1.3523 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238616628.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = -58.526533 kcal Electronic energy + Delta-G solvation = -10930.295598 eV Core-core repulsion = 8593.507948 eV Total energy + Delta-G solvation = -2336.787650 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -49.74095 -43.47020 -36.79779 -33.73408 -33.27981 -30.17396 -27.92845 -24.57533 -22.77247 -21.56356 -18.88710 -18.41131 -17.30901 -16.87132 -16.66155 -16.19924 -15.79724 -15.72972 -14.78230 -14.56027 -13.70810 -13.39536 -13.02327 -12.87432 -12.53714 -12.08958 -11.94885 -10.82180 -10.60337 -9.52787 -9.22930 -8.21164 -6.47825 0.73972 1.37542 1.39738 1.45693 1.53432 2.09575 2.35742 2.98055 3.23534 3.81259 4.11465 4.39869 4.62200 4.73267 5.00040 5.25540 5.56507 5.58758 5.85320 6.17525 6.49026 6.76334 7.00877 7.28554 8.74741 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.062114 B = 0.011160 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.672259 B = 2508.325819 C = 2676.991755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.029 3.971 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.571 4.571 8 H 0.049 0.951 9 C 0.279 3.721 10 H 0.049 0.951 11 N -0.842 5.842 12 C 0.064 3.936 13 C -0.273 4.273 14 C -0.017 4.017 15 F -0.126 7.126 16 C -0.068 4.068 17 O -0.164 6.164 18 H 0.273 0.727 19 H 0.324 0.676 20 H 0.354 0.646 21 H 0.157 0.843 22 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -5.250 1.365 7.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.172 4.172 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.611 4.611 8 H 0.067 0.933 9 C 0.168 3.832 10 H 0.067 0.933 11 N -0.372 5.372 12 C 0.013 3.987 13 C -0.293 4.293 14 C -0.037 4.037 15 F -0.105 7.105 16 C -0.136 4.136 17 O -0.059 6.059 18 H 0.082 0.918 19 H 0.133 0.867 20 H 0.170 0.830 21 H 0.175 0.825 22 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.712 -5.784 1.343 7.580 hybrid contribution 0.810 1.521 -0.420 1.773 sum 5.522 -4.264 0.923 7.037 Atomic orbital electron populations 1.69806 1.06849 1.28568 1.49666 1.25701 0.95834 1.02362 0.93345 0.85380 0.78612 0.78849 0.78014 1.19860 1.20197 1.19990 1.21934 0.93535 0.91857 1.53746 0.93291 1.17579 0.87282 0.85828 0.92503 0.93310 1.59411 1.18123 1.55707 1.03916 1.23084 0.95558 0.96281 0.83794 1.21550 1.05624 1.00769 1.01405 1.17712 1.01236 0.94136 0.90626 1.91407 1.80820 1.62625 1.75612 1.24511 1.00461 0.93752 0.94864 1.84152 1.45827 1.40193 1.35763 0.91762 0.86674 0.83026 0.82542 0.73182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.25 11.54 21.45 0.25 -48.00 14 2 C 0.03 1.51 5.38 84.66 0.46 1.97 14 3 Si 0.97 41.53 29.54 68.60 2.03 43.56 14 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 14 5 H -0.28 -11.63 7.11 99.48 0.71 -10.93 14 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 14 7 C -0.57 -30.40 8.71 25.60 0.22 -30.17 14 8 H 0.05 2.66 7.74 -2.91 -0.02 2.64 14 9 C 0.28 13.91 3.17 43.42 0.14 14.04 14 10 H 0.05 2.63 8.13 -2.39 -0.02 2.61 14 11 N -0.84 -39.94 9.18 -174.96 -1.61 -41.55 14 12 C 0.06 2.87 6.08 24.84 0.15 3.03 14 13 C -0.27 -11.17 10.80 22.22 0.24 -10.93 14 14 C -0.02 -0.60 8.08 22.24 0.18 -0.42 14 15 F -0.13 -4.25 17.32 44.97 0.78 -3.47 14 16 C -0.07 -2.18 12.10 66.99 0.81 -1.37 14 17 O -0.16 -6.59 10.54 -3.82 -0.04 -6.63 14 18 H 0.27 13.63 8.31 -92.71 -0.77 12.85 14 19 H 0.32 14.76 8.88 -89.69 -0.80 13.97 14 20 H 0.35 17.62 7.08 -89.69 -0.63 16.99 14 21 H 0.16 6.03 8.06 -2.91 -0.02 6.00 14 22 H 0.25 5.17 8.06 -2.91 -0.02 5.15 14 Total: -1.00 -55.91 210.01 3.43 -52.47 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.17 Total: 27.47 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 2.20 Total: -23.86 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -1.36 Total: -89.55 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.04 Total: -6.63 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -55.91 3.43 -52.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238616628.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.054 kcal (2) G-P(sol) polarization free energy of solvation -55.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds