Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86800 * 120.00385 * 2 1 4 4 H 1.48501 * 109.47018 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.47045 * 30.00073 * 3 2 1 6 6 H 1.48493 * 109.47343 * 150.00499 * 3 2 1 7 7 C 1.39922 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00125 * 197.36398 * 7 2 1 9 9 C 1.41235 * 119.99723 * 17.36620 * 7 2 1 10 10 C 1.41105 * 120.64115 * 23.78395 * 9 7 2 11 11 C 1.36870 * 118.37214 * 180.26787 * 10 9 7 12 12 C 1.38999 * 119.60743 * 359.75309 * 11 10 9 13 13 F 1.35095 * 119.34564 * 179.97438 * 12 11 10 14 14 N 1.32285 * 121.30681 * 0.02562 * 12 11 10 15 15 C 1.31783 * 121.76219 * 359.97162 * 14 12 11 16 16 F 1.35103 * 119.88496 * 179.97438 * 15 14 12 17 17 H 0.97001 * 119.99640 * 359.97438 * 1 2 3 18 18 H 1.08000 * 120.81565 * 0.02562 * 10 9 7 19 19 H 1.08005 * 120.19860 * 179.77095 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5403 1.4401 0.6999 7 6 2.0083 -1.2118 -0.0005 8 1 3.0514 -1.2332 0.2786 9 6 1.3503 -2.4068 -0.3662 10 6 0.2017 -2.3738 -1.1851 11 6 -0.4024 -3.5592 -1.5063 12 6 0.1275 -4.7518 -1.0278 13 9 -0.4732 -5.9188 -1.3477 14 7 1.2079 -4.7667 -0.2645 15 6 1.8313 -3.6570 0.0770 16 9 2.9315 -3.7162 0.8589 17 1 -0.4850 0.8401 0.0004 18 1 -0.1934 -1.4358 -1.5464 19 1 -1.2854 -3.5680 -2.1282 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238628989.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = -84.072947 kcal Electronic energy + Delta-G solvation = -10687.322447 eV Core-core repulsion = 8225.966716 eV Total energy + Delta-G solvation = -2461.355731 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 185.035 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.54507 -49.43656 -40.08986 -36.21350 -32.99271 -31.62898 -27.49461 -24.16270 -23.70347 -19.57247 -19.08362 -18.48839 -17.18420 -16.94687 -16.42005 -16.00771 -15.63430 -15.18688 -14.19376 -13.96497 -13.72305 -13.48298 -13.04533 -12.87121 -12.43012 -11.91666 -11.34570 -10.64612 -10.51535 -9.63110 -8.92513 -6.63512 0.32621 0.61541 1.41141 1.48900 1.56556 2.15355 2.43013 2.71731 3.24054 3.72669 4.19232 4.37618 4.74585 4.99543 5.09927 5.44817 5.59308 5.75492 6.21647 6.43105 6.47844 6.92431 8.02635 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.061872 B = 0.013678 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.438884 B = 2046.604190 C = 2432.232514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.039 3.961 3 Si 0.998 3.002 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.027 3.973 10 C -0.110 4.110 11 C -0.146 4.146 12 C 0.157 3.843 13 F -0.138 7.138 14 N -0.537 5.537 15 C 0.152 3.848 16 F -0.136 7.136 17 H 0.305 0.695 18 H 0.152 0.848 19 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 4.631 -2.421 5.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.181 4.181 3 Si 0.817 3.183 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.108 0.892 9 C 0.021 3.979 10 C -0.135 4.135 11 C -0.168 4.168 12 C 0.002 3.998 13 F -0.117 7.117 14 N -0.256 5.256 15 C -0.004 4.004 16 F -0.116 7.116 17 H 0.117 0.883 18 H 0.169 0.831 19 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.412 3.951 -2.095 4.491 hybrid contribution 0.118 0.605 0.055 0.619 sum -0.294 4.556 -2.040 5.001 Atomic orbital electron populations 1.69749 1.09073 1.32562 1.30067 1.26945 0.95719 1.04873 0.90551 0.84938 0.78858 0.74334 0.80213 1.17726 1.18462 1.18359 1.19930 0.98752 0.91355 1.37347 0.89157 1.18588 0.94531 0.91812 0.92976 1.21341 0.96589 0.97918 0.97643 1.21383 1.02159 0.90613 1.02606 1.17252 0.94551 0.81740 1.06248 1.91430 1.81360 1.47571 1.91381 1.65254 1.10373 1.34576 1.15396 1.17804 0.90886 0.89197 1.02496 1.91379 1.50622 1.96911 1.72711 0.88285 0.83063 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -34.94 10.92 21.82 0.24 -34.70 13 2 C 0.04 1.71 5.18 85.24 0.44 2.15 13 3 Si 1.00 32.52 29.59 68.60 2.03 34.55 13 4 H -0.25 -7.87 7.11 99.48 0.71 -7.17 13 5 H -0.26 -7.94 7.11 99.48 0.71 -7.23 13 6 H -0.26 -8.56 7.11 99.48 0.71 -7.85 13 7 C -0.45 -21.96 8.81 23.41 0.21 -21.76 13 8 H 0.09 4.37 7.73 -2.91 -0.02 4.35 13 9 C 0.03 1.40 5.60 -21.14 -0.12 1.29 13 10 C -0.11 -5.16 8.75 22.65 0.20 -4.96 13 11 C -0.15 -6.39 10.00 22.13 0.22 -6.17 13 12 C 0.16 7.60 8.41 84.81 0.71 8.32 13 13 F -0.14 -6.20 17.28 44.97 0.78 -5.42 13 14 N -0.54 -28.74 10.37 -195.51 -2.03 -30.76 13 15 C 0.15 8.19 8.45 85.40 0.72 8.91 13 16 F -0.14 -7.17 16.75 44.97 0.75 -6.42 13 17 H 0.31 11.74 8.30 -92.71 -0.77 10.97 13 18 H 0.15 6.83 6.20 -2.91 -0.02 6.81 13 19 H 0.16 5.56 8.06 -2.91 -0.02 5.54 13 Total: -1.00 -55.01 191.72 5.44 -49.56 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.29 Total: 5.42 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 2.38 Total: -12.22 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -1.79 Total: -65.47 kcal Atomic # 9 Polarization: -13.37 SS G_CDS: 1.53 Total: -11.84 kcal Atomic # 14 Polarization: 32.52 SS G_CDS: 2.03 Total: 34.55 kcal Total: -55.01 5.44 -49.56 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238628989.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.509 kcal (2) G-P(sol) polarization free energy of solvation -55.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds