Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00151 * 2 1 4 4 H 1.48497 * 109.46768 * 269.99771 * 3 2 1 5 5 H 1.48500 * 109.47319 * 29.99713 * 3 2 1 6 6 H 1.48498 * 109.47080 * 149.99808 * 3 2 1 7 7 C 1.37882 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99650 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00174 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.63232 * 56.88580 * 9 7 2 11 11 C 1.55141 * 110.85334 * 293.68336 * 9 7 2 12 12 C 1.54906 * 101.65274 * 205.89407 * 11 9 7 13 13 N 1.47846 * 104.79743 * 37.06883 * 12 11 9 14 14 C 1.47440 * 108.56252 * 335.90442 * 13 12 11 15 15 H 1.09007 * 109.88586 * 120.39843 * 14 13 12 16 16 C 1.50705 * 109.88934 * 241.41897 * 14 13 12 17 17 O 1.20830 * 119.99434 * 18.54953 * 16 14 13 18 18 O 1.34228 * 120.00484 * 198.54996 * 16 14 13 19 19 H 0.97006 * 119.99777 * 359.97438 * 1 2 3 20 20 H 1.09007 * 110.99330 * 323.98497 * 11 9 7 21 21 H 1.09004 * 110.99695 * 87.76177 * 11 9 7 22 22 H 1.08997 * 110.37274 * 278.23810 * 12 11 9 23 23 H 1.09004 * 110.37092 * 155.89866 * 12 11 9 24 24 H 1.00901 * 110.99770 * 213.64006 * 13 12 11 25 25 H 0.96695 * 116.99751 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5767 -2.5533 -0.8541 11 6 0.4700 -2.6860 1.3280 12 6 0.3694 -4.2292 1.4172 13 7 1.6596 -4.7228 0.8904 14 6 2.2282 -3.6934 0.0011 15 1 3.2014 -3.3761 0.3760 16 6 2.3713 -4.2438 -1.3945 17 8 1.7489 -5.2259 -1.7233 18 8 3.1900 -3.6430 -2.2723 19 1 -0.4850 0.8401 0.0004 20 1 1.0305 -2.2818 2.1710 21 1 -0.5193 -2.2325 1.2662 22 1 -0.4549 -4.5918 0.8032 23 1 0.2380 -4.5416 2.4533 24 1 1.5396 -5.5971 0.4012 25 1 3.2484 -4.0324 -3.1555 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238675833.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = -121.008757 kcal Electronic energy + Delta-G solvation = -11574.208064 eV Core-core repulsion = 9358.171286 eV Total energy + Delta-G solvation = -2216.036778 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.56995 -38.88031 -37.08216 -34.77304 -31.10841 -30.63591 -26.78680 -24.17796 -21.84262 -21.16205 -19.37919 -18.56275 -18.31990 -16.74827 -16.31701 -15.77890 -15.65204 -14.44157 -14.19926 -13.84131 -13.33322 -13.03438 -12.71852 -12.61635 -12.53740 -12.37404 -12.03048 -11.60678 -11.31969 -11.01556 -10.52554 -9.57440 -8.16406 -6.26212 1.12412 1.45250 1.46436 1.56844 2.15654 2.44618 3.16385 3.31873 4.05374 4.16090 4.38654 4.45472 4.57522 4.81588 5.03456 5.22658 5.41643 5.56332 5.60287 5.77339 5.85125 6.19531 6.34827 6.79852 6.99013 7.41625 8.93577 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.043583 B = 0.015083 C = 0.012321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.291333 B = 1855.890235 C = 2271.956104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.047 3.953 10 H 0.000 1.000 11 C -0.101 4.101 12 C 0.044 3.956 13 N -0.659 5.659 14 C 0.085 3.915 15 H 0.115 0.885 16 C 0.482 3.518 17 O -0.555 6.555 18 O -0.501 6.501 19 H 0.262 0.738 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.037 0.963 23 H 0.099 0.901 24 H 0.345 0.655 25 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -4.946 -0.419 6.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.027 3.973 10 H 0.018 0.982 11 C -0.139 4.139 12 C -0.085 4.085 13 N -0.292 5.292 14 C -0.026 4.026 15 H 0.132 0.868 16 C 0.326 3.674 17 O -0.448 6.448 18 O -0.312 6.312 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.117 0.883 24 H 0.164 0.836 25 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.921 -4.759 0.438 6.181 hybrid contribution -0.457 0.569 -1.601 1.759 sum 3.464 -4.190 -1.163 5.559 Atomic orbital electron populations 1.70073 1.07376 1.27578 1.50875 1.25749 0.95642 1.02581 0.94452 0.85530 0.78865 0.78971 0.78175 1.20335 1.21061 1.18755 1.21327 0.93285 0.90632 1.51200 0.91661 1.19697 0.92002 0.91300 0.94260 0.98173 1.22508 1.00072 0.93076 0.98272 1.22995 0.89386 0.95455 1.00650 1.62390 1.26177 1.05071 1.35587 1.22343 1.02786 0.93486 0.84012 0.86761 1.24329 0.74176 0.79621 0.89274 1.90596 1.46385 1.27993 1.79783 1.84604 1.60916 1.58140 1.27550 0.92871 0.92470 0.92627 0.94443 0.88320 0.83576 0.71740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.12 12.49 21.45 0.27 -51.85 15 2 C 0.02 0.81 5.36 84.66 0.45 1.27 15 3 Si 0.96 42.38 29.54 68.60 2.03 44.41 15 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 7 C -0.53 -27.88 8.48 25.60 0.22 -27.67 15 8 H 0.07 3.36 7.53 -2.91 -0.02 3.34 15 9 C 0.05 2.31 2.29 -10.36 -0.02 2.29 15 10 H 0.00 0.01 7.85 -2.39 -0.02 -0.01 15 11 C -0.10 -4.58 5.95 31.98 0.19 -4.39 15 12 C 0.04 1.63 7.57 86.77 0.66 2.29 15 13 N -0.66 -24.72 7.34 -486.20 -3.57 -28.29 15 14 C 0.08 3.52 3.58 44.51 0.16 3.68 15 15 H 0.11 4.69 7.64 -2.38 -0.02 4.68 15 16 C 0.48 18.83 7.41 71.24 0.53 19.36 15 17 O -0.56 -22.72 16.35 21.95 0.36 -22.36 15 18 O -0.50 -16.74 13.42 -51.40 -0.69 -17.43 15 19 H 0.26 14.16 8.31 -92.70 -0.77 13.39 15 20 H 0.06 2.64 8.05 -2.38 -0.02 2.62 15 21 H 0.05 2.73 7.76 -2.39 -0.02 2.71 15 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.10 3.13 8.14 -2.39 -0.02 3.11 15 24 H 0.34 12.35 7.18 -89.69 -0.64 11.70 15 25 H 0.42 9.26 9.10 -74.06 -0.67 8.58 15 Total: -1.00 -61.25 220.80 0.47 -60.78 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -0.10 Total: 17.93 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 2.18 Total: -3.18 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.30 Total: -80.14 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.33 Total: -39.80 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -61.25 0.47 -60.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238675833.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.234 kcal (2) G-P(sol) polarization free energy of solvation -61.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds