Wall clock time and date at job start Mon Mar 30 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99814 * 2 1 4 4 H 1.48500 * 109.46834 * 240.00218 * 3 2 1 5 5 H 1.48501 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46886 * 120.00309 * 3 2 1 7 7 C 1.37871 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00501 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99917 * 359.97438 * 7 2 1 10 10 H 1.09003 * 108.65611 * 307.08905 * 9 7 2 11 11 C 1.54609 * 108.78610 * 65.38009 * 9 7 2 12 12 C 1.54354 * 111.44581 * 161.89267 * 11 9 7 13 13 O 1.39967 * 112.57111 * 40.68381 * 12 11 9 14 14 C 1.44223 * 112.36304 * 262.86478 * 13 12 11 15 15 C 1.45988 * 112.10279 * 82.60503 * 14 13 12 16 16 C 1.50169 * 108.82916 * 188.76619 * 9 7 2 17 17 H 1.08995 * 109.67925 * 266.72859 * 16 9 7 18 18 N 1.46907 * 109.52376 * 27.28422 * 16 9 7 19 19 H 0.97001 * 120.00711 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.08567 * 41.38617 * 11 9 7 21 21 H 1.09000 * 109.08274 * 282.39750 * 11 9 7 22 22 H 1.08997 * 108.86243 * 279.88130 * 12 11 9 23 23 H 1.09008 * 108.85924 * 161.47653 * 12 11 9 24 24 H 1.09002 * 108.95803 * 321.92762 * 14 13 12 25 25 H 1.09004 * 108.88169 * 203.23126 * 14 13 12 26 26 H 1.09004 * 109.02738 * 60.51375 * 15 14 13 27 27 H 1.09001 * 109.03265 * 179.42840 * 15 14 13 28 28 H 1.00900 * 110.99971 * 64.65674 * 18 16 9 29 29 H 1.00899 * 111.00048 * 188.61983 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5376 -2.4899 0.8236 11 6 0.4735 -2.6252 -1.3309 12 6 0.0536 -4.0854 -1.6030 13 8 -0.3915 -4.7404 -0.4490 14 6 0.6432 -5.5365 0.1639 15 6 1.5203 -4.7370 1.0141 16 6 2.2254 -3.6213 0.2155 17 1 2.5544 -4.0120 -0.7473 18 7 3.3826 -3.1275 0.9738 19 1 -0.4851 0.8400 0.0004 20 1 1.1062 -2.2782 -2.1478 21 1 -0.4187 -2.0009 -1.2828 22 1 0.9075 -4.6278 -2.0090 23 1 -0.7478 -4.0897 -2.3420 24 1 1.2397 -6.0051 -0.6189 25 1 0.1779 -6.3152 0.7682 26 1 0.9283 -4.2848 1.8098 27 1 2.2742 -5.3872 1.4580 28 1 3.1105 -2.8384 1.9014 29 1 4.1135 -3.8221 1.0112 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258515053.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:41 Heat of formation + Delta-G solvation = -46.648774 kcal Electronic energy + Delta-G solvation = -12106.002959 eV Core-core repulsion = 10029.023767 eV Total energy + Delta-G solvation = -2076.979192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.92131 -35.33577 -32.91854 -30.91798 -29.75141 -26.55060 -23.93648 -22.74686 -20.77837 -18.77038 -16.27713 -15.99904 -15.26320 -14.73978 -14.38218 -14.03739 -13.20126 -13.06543 -12.41430 -12.04514 -11.41802 -11.08029 -10.86202 -10.79174 -10.50989 -10.20376 -9.85368 -9.58757 -9.26748 -8.88087 -8.50945 -8.09365 -7.52693 -5.78489 -3.76912 3.44766 3.48795 3.52519 4.49610 4.62135 5.24652 5.42989 5.57317 5.59038 5.86366 5.90330 6.00997 6.14260 6.27825 6.32907 6.44871 6.67317 6.99182 7.11904 7.40110 7.80467 7.91005 8.03801 8.15705 8.28844 8.40305 8.75081 9.35273 9.85440 11.30993 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.052221 B = 0.014580 C = 0.012344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.053615 B = 1919.976170 C = 2267.747959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.050 3.950 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.488 4.488 8 H 0.080 0.920 9 C 0.049 3.951 10 H 0.029 0.971 11 C -0.126 4.126 12 C 0.055 3.945 13 O -0.371 6.371 14 C 0.071 3.929 15 C -0.190 4.190 16 C 0.107 3.893 17 H 0.058 0.942 18 N -0.817 5.817 19 H 0.255 0.745 20 H 0.048 0.952 21 H 0.078 0.922 22 H 0.032 0.968 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.338 0.662 29 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -8.722 -0.081 9.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.150 4.150 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.030 3.970 10 H 0.048 0.952 11 C -0.165 4.165 12 C -0.022 4.022 13 O -0.290 6.290 14 C -0.006 4.006 15 C -0.230 4.230 16 C -0.005 4.005 17 H 0.076 0.924 18 N -0.343 5.343 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.096 0.904 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.319 -7.995 -0.571 8.344 hybrid contribution 0.434 0.163 0.570 0.735 sum 2.753 -7.831 -0.001 8.301 Atomic orbital electron populations 1.69966 1.05850 1.25960 1.52317 1.25077 0.94729 0.98968 0.96199 0.86718 0.79422 0.83695 0.78344 1.20669 1.21933 1.20617 1.21451 0.94270 0.89321 1.47650 0.90245 1.18478 0.92269 0.92425 0.93810 0.95237 1.22617 1.01770 0.92418 0.99699 1.22601 0.97524 0.95538 0.86561 1.87729 1.34960 1.63864 1.42450 1.21312 0.90174 0.92853 0.96256 1.22160 0.99663 1.00066 1.01100 1.21197 0.91104 0.93643 0.94511 0.92389 1.58986 1.10779 1.42825 1.21706 0.93533 0.93281 0.90375 0.94952 0.92146 0.94002 0.90920 0.91219 0.92764 0.84884 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 11.93 55.43 0.66 -26.09 15 2 C 0.05 1.41 5.32 -17.82 -0.09 1.32 15 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 15 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 15 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 7 C -0.49 -13.47 7.68 -34.44 -0.26 -13.73 15 8 H 0.08 2.21 6.55 -52.48 -0.34 1.86 15 9 C 0.05 1.22 1.61 -92.33 -0.15 1.07 15 10 H 0.03 0.84 7.31 -51.93 -0.38 0.46 15 11 C -0.13 -3.02 5.21 -25.18 -0.13 -3.15 15 12 C 0.05 1.08 6.09 37.87 0.23 1.31 15 13 O -0.37 -7.50 10.35 -32.84 -0.34 -7.84 15 14 C 0.07 1.18 6.11 33.83 0.21 1.38 15 15 C -0.19 -3.30 5.08 -29.39 -0.15 -3.45 15 16 C 0.11 2.18 2.72 -68.45 -0.19 1.99 15 17 H 0.06 1.17 7.07 -51.93 -0.37 0.81 15 18 N -0.82 -15.63 7.11 -5.30 -0.04 -15.67 15 19 H 0.25 7.32 8.31 -40.82 -0.34 6.99 15 20 H 0.05 1.18 7.98 -51.93 -0.41 0.77 15 21 H 0.08 2.10 7.02 -51.93 -0.36 1.73 15 22 H 0.03 0.57 6.53 -51.93 -0.34 0.23 15 23 H 0.06 1.10 8.14 -51.92 -0.42 0.68 15 24 H 0.04 0.62 7.35 -51.93 -0.38 0.24 15 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 26 H 0.07 1.33 7.53 -51.93 -0.39 0.94 15 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 28 H 0.34 6.45 8.95 -39.29 -0.35 6.10 15 29 H 0.31 4.89 9.08 -39.29 -0.36 4.54 15 LS Contribution 228.16 15.07 3.44 3.44 Total: -1.00 -30.00 228.16 -5.93 -35.93 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.09 Total: 6.31 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.54 Total: -13.25 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.62 Total: -41.76 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.34 Total: -7.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.00 -5.93 -35.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258515053.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.716 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds