Wall clock time and date at job start Mon Mar 30 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99814 * 2 1 4 4 H 1.48500 * 109.46834 * 240.00218 * 3 2 1 5 5 H 1.48501 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46886 * 120.00309 * 3 2 1 7 7 C 1.37871 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00501 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99917 * 359.97438 * 7 2 1 10 10 H 1.09003 * 108.65611 * 307.08905 * 9 7 2 11 11 C 1.54609 * 108.78610 * 65.38009 * 9 7 2 12 12 C 1.54354 * 111.44581 * 161.89267 * 11 9 7 13 13 O 1.39967 * 112.57111 * 40.68381 * 12 11 9 14 14 C 1.44223 * 112.36304 * 262.86478 * 13 12 11 15 15 C 1.45988 * 112.10279 * 82.60503 * 14 13 12 16 16 C 1.50169 * 108.82916 * 188.76619 * 9 7 2 17 17 H 1.08995 * 109.67925 * 266.72859 * 16 9 7 18 18 N 1.46907 * 109.52376 * 27.28422 * 16 9 7 19 19 H 0.97001 * 120.00711 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.08567 * 41.38617 * 11 9 7 21 21 H 1.09000 * 109.08274 * 282.39750 * 11 9 7 22 22 H 1.08997 * 108.86243 * 279.88130 * 12 11 9 23 23 H 1.09008 * 108.85924 * 161.47653 * 12 11 9 24 24 H 1.09002 * 108.95803 * 321.92762 * 14 13 12 25 25 H 1.09004 * 108.88169 * 203.23126 * 14 13 12 26 26 H 1.09004 * 109.02738 * 60.51375 * 15 14 13 27 27 H 1.09001 * 109.03265 * 179.42840 * 15 14 13 28 28 H 1.00900 * 110.99971 * 64.65674 * 18 16 9 29 29 H 1.00899 * 111.00048 * 188.61983 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5376 -2.4899 0.8236 11 6 0.4735 -2.6252 -1.3309 12 6 0.0536 -4.0854 -1.6030 13 8 -0.3915 -4.7404 -0.4490 14 6 0.6432 -5.5365 0.1639 15 6 1.5203 -4.7370 1.0141 16 6 2.2254 -3.6213 0.2155 17 1 2.5544 -4.0120 -0.7473 18 7 3.3826 -3.1275 0.9738 19 1 -0.4851 0.8400 0.0004 20 1 1.1062 -2.2782 -2.1478 21 1 -0.4187 -2.0009 -1.2828 22 1 0.9075 -4.6278 -2.0090 23 1 -0.7478 -4.0897 -2.3420 24 1 1.2397 -6.0051 -0.6189 25 1 0.1779 -6.3152 0.7682 26 1 0.9283 -4.2848 1.8098 27 1 2.2742 -5.3872 1.4580 28 1 3.1105 -2.8384 1.9014 29 1 4.1135 -3.8221 1.0112 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258515053.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:41 Heat of formation + Delta-G solvation = -68.900885 kcal Electronic energy + Delta-G solvation = -12106.967883 eV Core-core repulsion = 10029.023767 eV Total energy + Delta-G solvation = -2077.944116 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.47260 -36.98809 -34.81118 -32.74938 -31.30895 -28.45545 -25.67329 -24.49471 -22.28775 -20.58879 -18.24468 -17.52603 -16.89205 -16.58395 -15.90491 -15.73987 -15.03198 -14.64921 -14.21178 -13.59025 -13.14337 -12.84187 -12.70442 -12.62536 -12.37614 -11.80448 -11.58267 -11.42977 -11.04645 -10.79322 -10.43171 -10.11649 -9.07276 -7.95548 -6.00085 1.44508 1.45838 1.53326 2.53316 3.11532 3.32546 3.90785 4.03448 4.19450 4.37207 4.43237 4.59850 4.64861 4.72099 4.87713 4.91949 5.05900 5.27594 5.35163 5.53391 5.84636 6.01853 6.09866 6.44536 6.51581 6.74488 6.98896 7.18672 7.66507 9.12500 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.052221 B = 0.014580 C = 0.012344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.053615 B = 1919.976170 C = 2267.747959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.005 4.005 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.050 3.950 10 H -0.015 1.015 11 C -0.123 4.123 12 C 0.064 3.936 13 O -0.395 6.395 14 C 0.061 3.939 15 C -0.179 4.179 16 C 0.111 3.889 17 H 0.066 0.934 18 N -0.829 5.829 19 H 0.251 0.749 20 H 0.039 0.961 21 H 0.037 0.963 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.337 0.663 29 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -10.217 -0.251 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.532 4.532 8 H 0.097 0.903 9 C 0.031 3.969 10 H 0.003 0.997 11 C -0.162 4.162 12 C -0.013 4.013 13 O -0.314 6.314 14 C -0.016 4.016 15 C -0.219 4.219 16 C -0.001 4.001 17 H 0.084 0.916 18 N -0.357 5.357 19 H 0.060 0.940 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.740 -9.511 -0.738 10.246 hybrid contribution 0.029 0.604 0.654 0.890 sum 3.769 -8.907 -0.084 9.672 Atomic orbital electron populations 1.70132 1.07282 1.26289 1.53836 1.25836 0.95454 1.02359 0.96466 0.85746 0.78158 0.79825 0.78568 1.20017 1.22125 1.19939 1.21823 0.94387 0.90710 1.46288 0.90346 1.18437 0.92251 0.93568 0.92625 0.99689 1.22464 0.99673 0.95251 0.98845 1.22437 0.99135 0.92761 0.86980 1.87716 1.36782 1.64200 1.42737 1.21625 0.89977 0.92775 0.97177 1.22021 1.00187 0.99523 1.00148 1.21002 0.90607 0.92815 0.95700 0.91613 1.58814 1.11136 1.44195 1.21546 0.94000 0.94203 0.94444 0.92107 0.90730 0.91290 0.88161 0.93734 0.89046 0.85057 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 11.93 21.44 0.26 -57.01 15 2 C -0.01 -0.31 5.32 84.65 0.45 0.14 15 3 Si 0.95 46.03 29.54 68.60 2.03 48.06 15 4 H -0.27 -12.94 7.11 99.48 0.71 -12.24 15 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 15 6 H -0.27 -12.89 7.11 99.48 0.71 -12.19 15 7 C -0.49 -27.45 7.68 25.60 0.20 -27.25 15 8 H 0.08 4.32 6.55 -2.91 -0.02 4.30 15 9 C 0.05 2.52 1.61 -11.90 -0.02 2.50 15 10 H -0.02 -0.89 7.31 -2.39 -0.02 -0.91 15 11 C -0.12 -5.97 5.21 31.60 0.16 -5.81 15 12 C 0.06 2.43 6.09 72.44 0.44 2.87 15 13 O -0.40 -15.28 10.35 -140.43 -1.45 -16.74 15 14 C 0.06 1.80 6.11 69.83 0.43 2.22 15 15 C -0.18 -5.75 5.08 28.87 0.15 -5.60 15 16 C 0.11 4.29 2.72 44.43 0.12 4.42 15 17 H 0.07 2.46 7.07 -2.39 -0.02 2.45 15 18 N -0.83 -30.14 7.11 -170.69 -1.21 -31.36 15 19 H 0.25 14.91 8.31 -92.71 -0.77 14.14 15 20 H 0.04 1.94 7.98 -2.39 -0.02 1.92 15 21 H 0.04 2.08 7.02 -2.39 -0.02 2.06 15 22 H 0.06 1.95 6.53 -2.39 -0.02 1.94 15 23 H 0.07 2.59 8.14 -2.38 -0.02 2.57 15 24 H 0.07 1.71 7.35 -2.39 -0.02 1.69 15 25 H 0.10 2.45 8.14 -2.38 -0.02 2.43 15 26 H 0.04 1.65 7.53 -2.38 -0.02 1.64 15 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 28 H 0.34 12.45 8.95 -89.69 -0.80 11.65 15 29 H 0.33 9.50 9.08 -89.69 -0.81 8.69 15 Total: -1.00 -65.81 228.16 1.08 -64.73 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.47 Total: 18.82 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 1.93 Total: -26.51 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -0.96 Total: -88.37 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.45 Total: -16.74 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -65.81 1.08 -64.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258515053.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.172 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds