Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 12 12 O 1.42903 * 109.47386 * 55.00374 * 11 9 7 13 13 N 1.46899 * 109.47244 * 179.97438 * 9 7 2 14 14 C 1.48541 * 110.99804 * 302.60492 * 13 9 7 15 15 C 1.54935 * 103.22509 * 159.72355 * 14 13 9 16 16 C 1.54601 * 102.92016 * 322.57980 * 15 14 13 17 17 C 1.47898 * 110.99862 * 59.99618 * 13 9 7 18 18 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 19 19 H 1.09008 * 109.47017 * 174.99970 * 11 9 7 20 20 H 1.08998 * 109.47192 * 294.99945 * 11 9 7 21 21 H 0.96698 * 114.00128 * 179.97438 * 12 11 9 22 22 H 1.09001 * 110.66453 * 278.15013 * 14 13 9 23 23 H 1.08993 * 110.67110 * 41.28273 * 14 13 9 24 24 H 1.09000 * 110.72101 * 204.22535 * 15 14 13 25 25 H 1.09000 * 110.73131 * 80.94415 * 15 14 13 26 26 H 1.08999 * 110.30949 * 263.04580 * 16 15 14 27 27 H 1.09007 * 110.30467 * 140.87817 * 16 15 14 28 28 H 1.08992 * 109.92180 * 333.51211 * 17 13 9 29 29 H 1.09003 * 109.91332 * 94.80688 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2489 12 8 1.1788 -2.3884 -2.4126 13 7 2.2057 -3.6157 0.0005 14 6 3.1195 -3.5347 -1.1677 15 6 4.3229 -4.4107 -0.7377 16 6 4.4576 -4.0971 0.7701 17 6 3.0749 -3.5699 1.1963 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1047 -3.5597 -1.2948 20 1 -0.3935 -1.8056 -1.2057 21 1 0.6861 -2.4277 -3.2437 22 1 2.6432 -3.9456 -2.0579 23 1 3.4346 -2.5055 -1.3391 24 1 5.2249 -4.1173 -1.2748 25 1 4.1063 -5.4675 -0.8941 26 1 5.2194 -3.3344 0.9313 27 1 4.7045 -5.0027 1.3243 28 1 3.1625 -2.5436 1.5526 29 1 2.6612 -4.2040 1.9805 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259465552.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = -67.605538 kcal Electronic energy + Delta-G solvation = -12141.626724 eV Core-core repulsion = 10063.738778 eV Total energy + Delta-G solvation = -2077.887946 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.90048 -37.13202 -34.92827 -32.66237 -29.47469 -28.61156 -26.84982 -23.03994 -21.49273 -21.14951 -18.51843 -17.84293 -17.17171 -16.39582 -15.91061 -14.76986 -14.71923 -14.30936 -13.98870 -13.76519 -13.24563 -12.88797 -12.67424 -12.25785 -12.09669 -11.94788 -11.87525 -11.63545 -11.27164 -11.06553 -10.66312 -10.28340 -8.98683 -8.05701 -6.21286 1.35153 1.37680 1.47601 2.40608 3.16516 3.59400 3.89850 4.05442 4.09571 4.31996 4.71186 4.74809 4.86744 5.00380 5.06376 5.08082 5.17795 5.21419 5.36699 5.45155 5.49383 5.58604 5.84743 6.14803 6.37168 6.48610 6.90353 7.27794 7.45721 8.92649 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.040428 B = 0.016601 C = 0.014130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.428731 B = 1686.271072 C = 1981.145513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.521 4.521 8 H 0.046 0.954 9 C 0.198 3.802 10 H 0.018 0.982 11 C 0.101 3.899 12 O -0.567 6.567 13 N -0.525 5.525 14 C 0.056 3.944 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.029 3.971 18 H 0.261 0.739 19 H 0.018 0.982 20 H 0.050 0.950 21 H 0.367 0.633 22 H 0.072 0.928 23 H 0.028 0.972 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -5.715 -1.734 7.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.064 0.936 9 C 0.090 3.910 10 H 0.036 0.964 11 C 0.023 3.977 12 O -0.371 6.371 13 N -0.249 5.249 14 C -0.072 4.072 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.099 4.099 18 H 0.070 0.930 19 H 0.036 0.964 20 H 0.068 0.932 21 H 0.213 0.787 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.049 0.951 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.179 -6.017 -1.269 8.040 hybrid contribution -0.052 1.912 -0.264 1.931 sum 5.128 -4.105 -1.534 6.745 Atomic orbital electron populations 1.69961 1.06837 1.27042 1.52056 1.25557 0.95626 1.01895 0.94888 0.85645 0.78843 0.80414 0.77517 1.19975 1.20750 1.20567 1.21647 0.92621 0.92262 1.49480 0.93554 1.19325 0.91395 0.87645 0.92598 0.96438 1.21997 0.93535 0.96203 0.86000 1.86619 1.38489 1.95980 1.16019 1.65055 1.15078 1.42286 1.02521 1.23002 0.92305 0.97857 0.93994 1.22562 0.97684 1.00184 0.95515 1.22344 0.95580 1.01166 0.96773 1.22809 0.93424 0.99343 0.94326 0.92996 0.96405 0.93209 0.78709 0.91001 0.95368 0.90558 0.90415 0.92060 0.89531 0.95083 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.79 11.38 21.45 0.24 -52.55 15 2 C 0.02 1.06 5.30 84.65 0.45 1.51 15 3 Si 0.95 44.81 29.54 68.60 2.03 46.84 15 4 H -0.27 -12.85 7.11 99.48 0.71 -12.15 15 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 7 C -0.52 -29.02 5.87 25.60 0.15 -28.87 15 8 H 0.05 2.65 6.03 -2.91 -0.02 2.63 15 9 C 0.20 10.34 2.40 44.17 0.11 10.45 15 10 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 11 C 0.10 4.91 6.48 71.98 0.47 5.38 15 12 O -0.57 -25.39 9.98 -148.98 -1.49 -26.88 15 13 N -0.53 -23.77 5.30 -862.25 -4.57 -28.34 15 14 C 0.06 2.35 4.64 86.65 0.40 2.75 15 15 C -0.12 -3.90 7.06 31.80 0.22 -3.67 15 16 C -0.12 -3.87 6.93 31.48 0.22 -3.65 15 17 C 0.03 1.20 6.33 86.45 0.55 1.74 15 18 H 0.26 14.28 8.31 -92.71 -0.77 13.51 15 19 H 0.02 0.80 8.14 -2.38 -0.02 0.79 15 20 H 0.05 2.66 6.22 -2.39 -0.01 2.64 15 21 H 0.37 12.62 9.12 -74.06 -0.68 11.94 15 22 H 0.07 2.97 6.85 -2.39 -0.02 2.96 15 23 H 0.03 1.35 5.91 -2.39 -0.01 1.34 15 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.09 2.28 8.14 -2.38 -0.02 2.26 15 28 H 0.03 1.43 6.28 -2.39 -0.02 1.41 15 29 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -61.96 228.24 -0.76 -62.72 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.46 Total: 12.56 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 2.56 Total: -14.36 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -4.33 Total: -80.89 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.49 Total: -26.88 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -61.96 -0.76 -62.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259465552.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.881 kcal (2) G-P(sol) polarization free energy of solvation -61.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds