Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86810 * 119.99907 * 2 1 4 4 H 1.48494 * 109.47023 * 269.99897 * 3 2 1 5 5 H 1.48495 * 109.46895 * 30.00394 * 3 2 1 6 6 H 1.48498 * 109.46643 * 149.99779 * 3 2 1 7 7 C 1.37876 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99904 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00058 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46943 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46799 * 55.00146 * 10 9 7 12 12 N 1.46898 * 109.47042 * 294.99881 * 10 9 7 13 13 C 1.52998 * 109.46942 * 174.99740 * 10 9 7 14 14 H 1.08994 * 109.47409 * 60.00229 * 13 10 9 15 15 O 1.42907 * 109.47444 * 300.00061 * 13 10 9 16 16 C 1.53006 * 109.47150 * 180.02562 * 13 10 9 17 17 C 1.53000 * 117.49776 * 180.02562 * 16 13 10 18 18 C 1.52997 * 117.49537 * 248.62494 * 16 13 10 19 19 H 0.97000 * 119.99970 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47456 * 59.99801 * 9 7 2 21 21 H 1.09003 * 109.47019 * 299.99221 * 9 7 2 22 22 H 1.00897 * 110.99817 * 299.99389 * 12 10 9 23 23 H 1.00896 * 111.00175 * 63.95546 * 12 10 9 24 24 H 0.96705 * 113.99917 * 300.00677 * 15 13 10 25 25 H 1.09002 * 115.56020 * 34.30622 * 16 13 10 26 26 H 1.08990 * 117.49990 * 359.97438 * 17 16 13 27 27 H 1.09004 * 117.49237 * 214.97568 * 17 16 13 28 28 H 1.08999 * 117.49685 * 145.02116 * 18 16 13 29 29 H 1.08999 * 117.52022 * 359.97438 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5873 -3.1753 -0.8422 12 7 3.6325 -3.2935 1.2549 13 6 5.5464 -2.6382 -0.1253 14 1 5.9808 -2.0994 0.7168 15 8 5.9250 -1.9991 -1.3461 16 6 6.0564 -4.0808 -0.1260 17 6 7.5667 -4.2961 -0.2433 18 6 6.8599 -4.5466 1.0898 19 1 -0.4850 0.8400 -0.0004 20 1 3.8746 -0.6807 0.8905 21 1 3.8752 -0.6796 -0.8895 22 1 4.0231 -2.8124 2.0511 23 1 2.6288 -3.3627 1.3307 24 1 5.5730 -2.4260 -2.1392 25 1 5.4049 -4.8097 -0.6081 26 1 8.1968 -3.4101 -0.3204 27 1 7.9089 -5.1666 -0.8030 28 1 6.7371 -5.5820 1.4076 29 1 7.0257 -3.8255 1.8902 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259468112.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = -41.127604 kcal Electronic energy + Delta-G solvation = -11513.249909 eV Core-core repulsion = 9436.510132 eV Total energy + Delta-G solvation = -2076.739776 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.52563 -35.48114 -34.38727 -32.28313 -28.50291 -26.95043 -23.20099 -22.13168 -20.48198 -19.93331 -17.08492 -16.28271 -15.35021 -15.19038 -14.35175 -13.75223 -13.48041 -12.95104 -12.89123 -12.25492 -11.95603 -11.36533 -11.25988 -10.76710 -10.57714 -10.26930 -10.20125 -9.88324 -9.85154 -9.44153 -9.05821 -8.59689 -7.79965 -6.10217 -4.09216 3.29170 3.36382 3.41861 4.00109 4.41782 4.79897 4.85784 5.15815 5.23421 5.30212 5.46554 5.75879 5.79925 5.84588 5.97646 6.06379 6.30081 6.35959 6.59779 6.66507 7.15448 7.27307 7.71782 7.90819 8.10444 8.22257 8.45287 8.92680 9.52917 11.02585 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.063211 B = 0.010437 C = 0.009593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.853994 B = 2682.019872 C = 2918.191635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.042 4.042 10 C 0.076 3.924 11 H 0.071 0.929 12 N -0.834 5.834 13 C 0.139 3.861 14 H 0.087 0.913 15 O -0.558 6.558 16 C -0.161 4.161 17 C -0.185 4.185 18 C -0.164 4.164 19 H 0.263 0.737 20 H 0.012 0.988 21 H 0.023 0.977 22 H 0.327 0.673 23 H 0.349 0.651 24 H 0.372 0.628 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 -6.121 0.343 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.081 4.081 10 C -0.036 4.036 11 H 0.089 0.911 12 N -0.363 5.363 13 C 0.080 3.920 14 H 0.105 0.895 15 O -0.362 6.362 16 C -0.179 4.179 17 C -0.222 4.222 18 C -0.201 4.201 19 H 0.073 0.927 20 H 0.030 0.970 21 H 0.041 0.959 22 H 0.138 0.862 23 H 0.163 0.837 24 H 0.219 0.781 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.079 -6.239 0.456 13.602 hybrid contribution -0.544 1.468 -0.130 1.570 sum 11.535 -4.771 0.326 12.487 Atomic orbital electron populations 1.69914 1.06309 1.26968 1.50828 1.25015 0.94685 0.99236 0.94351 0.86750 0.80201 0.83513 0.78610 1.20244 1.21518 1.19166 1.21082 0.89361 0.94365 1.51402 0.91031 1.20268 0.97271 0.93481 0.97057 1.21930 0.92594 0.95631 0.93453 0.91066 1.59092 1.17365 1.56361 1.03472 1.21520 0.94469 0.89205 0.86824 0.89498 1.86548 1.76568 1.57237 1.15867 1.22872 0.93026 0.99000 1.03022 1.22877 0.95535 1.02772 1.00978 1.22749 1.04088 1.01803 0.91467 0.92709 0.96975 0.95899 0.86242 0.83687 0.78133 0.87953 0.88979 0.89482 0.89221 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 15 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 15 7 C -0.52 -14.51 9.10 -34.44 -0.31 -14.83 15 8 H 0.07 2.11 7.39 -52.49 -0.39 1.72 15 9 C -0.04 -0.99 3.61 -27.88 -0.10 -1.09 15 10 C 0.08 1.46 2.50 -67.71 -0.17 1.29 15 11 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 12 N -0.83 -14.96 8.78 -4.67 -0.04 -15.00 15 13 C 0.14 2.32 2.90 -26.73 -0.08 2.24 15 14 H 0.09 1.51 7.90 -51.93 -0.41 1.10 15 15 O -0.56 -9.43 12.49 -35.23 -0.44 -9.87 15 16 C -0.16 -2.28 4.97 -90.62 -0.45 -2.73 15 17 C -0.18 -2.30 10.15 -26.75 -0.27 -2.57 15 18 C -0.16 -2.09 10.17 -26.75 -0.27 -2.36 15 19 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 20 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 15 21 H 0.02 0.56 6.96 -51.93 -0.36 0.20 15 22 H 0.33 5.61 9.00 -39.29 -0.35 5.26 15 23 H 0.35 6.78 7.90 -39.29 -0.31 6.47 15 24 H 0.37 5.10 9.05 45.56 0.41 5.51 15 25 H 0.10 1.48 8.11 -51.93 -0.42 1.06 15 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 29 H 0.09 1.13 8.05 -51.93 -0.42 0.71 15 LS Contribution 244.78 15.07 3.69 3.69 Total: -1.00 -30.10 244.78 -5.92 -36.02 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -3.48 Total: 12.69 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.75 Total: -18.16 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.73 Total: -41.79 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.44 Total: -9.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.10 -5.92 -36.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259468112.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.103 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds