Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48497 * 109.47401 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46860 * 299.99856 * 3 2 1 6 6 H 1.48495 * 109.47493 * 59.99562 * 3 2 1 7 7 C 1.37881 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99507 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46714 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.61619 * 59.77960 * 10 9 7 12 12 C 1.53207 * 109.54096 * 299.55800 * 10 9 7 13 13 C 1.53092 * 109.14859 * 183.15833 * 12 10 9 14 14 O 1.42905 * 109.42428 * 57.60656 * 13 12 10 15 15 C 1.42898 * 114.09851 * 298.83405 * 14 13 12 16 16 C 1.53097 * 109.41490 * 61.15689 * 15 14 13 17 17 H 0.97000 * 120.00464 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.47013 * 59.99832 * 9 7 2 19 19 H 1.09003 * 109.46780 * 299.99737 * 9 7 2 20 20 H 1.00897 * 110.99478 * 300.21597 * 11 10 9 21 21 H 1.00894 * 111.00072 * 64.17419 * 11 10 9 22 22 H 1.08999 * 109.53319 * 63.25352 * 12 10 9 23 23 H 1.08992 * 109.51748 * 303.05568 * 12 10 9 24 24 H 1.09002 * 109.48343 * 297.61643 * 13 12 10 25 25 H 1.08999 * 109.47546 * 177.59237 * 13 12 10 26 26 H 1.08995 * 109.48500 * 181.13987 * 15 14 13 27 27 H 1.09000 * 109.47974 * 301.16817 * 15 14 13 28 28 H 1.09003 * 109.51867 * 62.29966 * 16 15 14 29 29 H 1.09005 * 109.52093 * 182.41951 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 3.0953 -3.5842 1.1962 12 6 3.1198 -3.5886 -1.2554 13 6 4.0570 -4.7987 -1.2862 14 8 3.2835 -5.9999 -1.2531 15 6 2.4819 -6.1454 -0.0790 16 6 1.4812 -4.9895 0.0005 17 1 -0.4851 0.8400 -0.0004 18 1 0.6248 -2.5571 -0.8896 19 1 0.6241 -2.5567 0.8904 20 1 3.6097 -2.7165 1.2183 21 1 2.5491 -3.7023 2.0363 22 1 3.7091 -2.6718 -1.2361 23 1 2.4854 -3.5964 -2.1417 24 1 4.7185 -4.7683 -0.4204 25 1 4.6518 -4.7745 -2.1993 26 1 1.9420 -7.0913 -0.1224 27 1 3.1229 -6.1328 0.8025 28 1 0.8138 -5.0257 -0.8605 29 1 0.8979 -5.0752 0.9174 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259472385.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -87.565045 kcal Electronic energy + Delta-G solvation = -11921.160633 eV Core-core repulsion = 9842.407178 eV Total energy + Delta-G solvation = -2078.753455 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50048 -37.01501 -34.54308 -31.94761 -30.58670 -29.81782 -26.03668 -24.38927 -23.01527 -20.00990 -18.53009 -17.00292 -16.74228 -16.46397 -16.34757 -15.71511 -15.24838 -14.34039 -14.12069 -13.71332 -13.39868 -12.97276 -12.88195 -12.63848 -12.54012 -12.15423 -11.88527 -11.70140 -11.03704 -10.83743 -10.61937 -10.43374 -9.27405 -8.21953 -6.32107 1.37475 1.39226 1.50844 2.37951 3.10922 3.13011 3.84527 3.95728 4.16155 4.27616 4.36388 4.52997 4.71163 4.82412 4.88641 5.02388 5.14577 5.20838 5.29516 5.34687 5.41308 5.60265 5.75845 6.17801 6.41016 6.46201 6.78042 6.84379 7.37341 8.90026 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.066536 B = 0.011436 C = 0.010738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.722890 B = 2447.825003 C = 2606.994114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.962 3.038 4 H -0.257 1.257 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.069 0.931 9 C 0.008 3.992 10 C 0.122 3.878 11 N -0.822 5.822 12 C -0.127 4.127 13 C 0.074 3.926 14 O -0.404 6.404 15 C 0.075 3.925 16 C -0.141 4.141 17 H 0.261 0.739 18 H -0.019 1.019 19 H -0.013 1.013 20 H 0.341 0.659 21 H 0.334 0.666 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 -7.738 0.570 10.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.031 4.031 10 C 0.029 3.971 11 N -0.350 5.350 12 C -0.165 4.165 13 C -0.002 4.002 14 O -0.324 6.324 15 C -0.001 4.001 16 C -0.179 4.179 17 H 0.070 0.930 18 H -0.001 1.001 19 H 0.005 0.995 20 H 0.154 0.846 21 H 0.146 0.854 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.928 -8.421 0.120 10.906 hybrid contribution -0.967 2.330 0.384 2.552 sum 5.962 -6.091 0.504 8.538 Atomic orbital electron populations 1.70118 1.07945 1.27488 1.52076 1.25962 0.95605 1.03324 0.95070 0.85444 0.79383 0.79137 0.77349 1.18085 1.21089 1.20830 1.21551 0.93468 0.91421 1.49559 0.91273 1.19717 0.94637 0.94391 0.94324 1.20708 0.92035 0.93192 0.91168 1.59246 1.30031 1.42005 1.03749 1.22014 0.98635 0.99224 0.96629 1.22535 0.92464 0.82903 1.02344 1.87787 1.60379 1.41202 1.42986 1.22509 0.92231 0.97324 0.88086 1.22202 0.98459 0.95426 1.01804 0.93040 1.00057 0.99479 0.84598 0.85435 0.91441 0.93443 0.91910 0.88387 0.87975 0.91807 0.92761 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.29 21.45 0.28 -56.15 15 2 C 0.00 -0.12 5.46 84.66 0.46 0.35 15 3 Si 0.96 43.32 29.54 68.60 2.03 45.35 15 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 7 C -0.52 -27.85 7.79 25.60 0.20 -27.65 15 8 H 0.07 3.48 5.82 -2.91 -0.02 3.46 15 9 C 0.01 0.41 4.23 29.85 0.13 0.53 15 10 C 0.12 4.81 0.57 3.66 0.00 4.81 15 11 N -0.82 -28.75 7.63 -151.06 -1.15 -29.90 15 12 C -0.13 -4.78 4.78 30.69 0.15 -4.64 15 13 C 0.07 2.32 6.68 72.01 0.48 2.80 15 14 O -0.40 -13.30 10.77 -148.98 -1.60 -14.91 15 15 C 0.07 2.22 6.68 72.01 0.48 2.70 15 16 C -0.14 -4.89 5.06 30.69 0.16 -4.73 15 17 H 0.26 14.87 8.31 -92.71 -0.77 14.10 15 18 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 15 19 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 20 H 0.34 12.51 7.41 -89.70 -0.66 11.85 15 21 H 0.33 11.23 8.99 -89.70 -0.81 10.42 15 22 H 0.07 2.64 6.77 -2.39 -0.02 2.63 15 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.06 1.91 7.75 -2.39 -0.02 1.89 15 25 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 26 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.06 1.82 7.75 -2.39 -0.02 1.80 15 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 29 H 0.07 2.32 8.14 -2.38 -0.02 2.30 15 Total: -1.00 -61.21 233.58 1.28 -59.93 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.33 Total: 21.51 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 2.05 Total: -25.84 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -0.87 Total: -86.05 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.60 Total: -14.91 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -61.21 1.28 -59.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259472385.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.633 kcal (2) G-P(sol) polarization free energy of solvation -61.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds