Wall clock time and date at job start Mon Mar 30 2020 02:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 11 11 N 1.46900 * 109.47234 * 60.00041 * 9 7 2 12 12 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 13 13 H 1.08998 * 109.51565 * 300.12354 * 12 9 7 14 14 C 1.53178 * 109.51956 * 180.02562 * 12 9 7 15 15 C 1.53175 * 109.03482 * 183.11066 * 14 12 9 16 16 C 1.53100 * 109.16240 * 56.97835 * 15 14 12 17 17 O 1.42906 * 109.41461 * 302.39070 * 16 15 14 18 18 C 1.42904 * 114.09451 * 61.15939 * 17 16 15 19 19 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 20 20 H 1.00904 * 110.99715 * 59.99602 * 11 9 7 21 21 H 1.00898 * 110.99605 * 183.95223 * 11 9 7 22 22 H 1.08999 * 109.54107 * 302.97712 * 14 12 9 23 23 H 1.09000 * 109.54674 * 63.15596 * 14 12 9 24 24 H 1.09000 * 109.52432 * 176.88319 * 15 14 12 25 25 H 1.09002 * 109.52265 * 297.00903 * 15 14 12 26 26 H 1.08991 * 109.48111 * 62.37519 * 16 15 14 27 27 H 1.09001 * 109.47811 * 182.39614 * 16 15 14 28 28 H 1.09003 * 109.47701 * 178.86274 * 18 17 16 29 29 H 1.08999 * 109.48246 * 58.82651 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2454 -3.6621 0.0018 13 1 2.8745 -3.6041 -0.8863 14 6 1.4806 -4.9893 0.0012 15 6 2.4839 -6.1440 0.0811 16 6 3.3490 -5.9724 1.3325 17 8 4.0080 -4.7052 1.2843 18 6 3.1196 -3.5863 1.2563 19 1 -0.4850 -0.8401 0.0004 20 1 0.9653 -2.5259 -2.0381 21 1 -0.1570 -3.4139 -1.1907 22 1 0.8132 -5.0259 0.8622 23 1 0.8977 -5.0739 -0.9160 24 1 1.9463 -7.0905 0.1369 25 1 3.1184 -6.1372 -0.8053 26 1 2.7181 -6.0205 2.2199 27 1 4.0931 -6.7680 1.3719 28 1 3.6985 -2.6629 1.2406 29 1 2.4856 -3.6032 2.1428 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259531159.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:01 Heat of formation + Delta-G solvation = -67.522932 kcal Electronic energy + Delta-G solvation = -11877.569073 eV Core-core repulsion = 9799.684709 eV Total energy + Delta-G solvation = -2077.884364 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.00218 -35.47631 -32.75048 -31.25233 -29.66773 -25.84974 -24.01123 -23.22734 -20.83239 -19.45901 -16.73523 -15.84768 -15.58780 -14.68515 -14.18325 -13.95766 -13.61718 -13.10021 -12.71188 -12.21930 -12.17126 -11.29057 -11.04121 -10.73358 -10.69735 -10.36310 -10.10871 -9.97796 -9.72620 -9.06030 -8.43286 -8.25822 -7.33246 -6.12774 -3.95968 3.50222 3.53712 3.66620 4.33703 4.62811 5.10422 5.18153 5.26373 5.46058 5.57466 5.62228 5.84485 5.94150 6.06500 6.11461 6.18673 6.24879 6.42001 6.63604 6.73865 6.81454 7.34916 7.67505 8.05849 8.35440 8.72510 8.83435 9.11731 9.89065 11.26705 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058834 B = 0.012090 C = 0.010518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.797468 B = 2315.377502 C = 2661.423424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.036 3.964 3 Si 1.066 2.934 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.615 4.615 8 H 0.048 0.952 9 C 0.214 3.786 10 H 0.026 0.974 11 N -0.833 5.833 12 C -0.140 4.140 13 H 0.063 0.937 14 C -0.121 4.121 15 C -0.153 4.153 16 C 0.062 3.938 17 O -0.394 6.394 18 C 0.077 3.923 19 H 0.289 0.711 20 H 0.324 0.676 21 H 0.298 0.702 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -9.623 0.970 10.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.173 4.173 3 Si 0.896 3.104 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.654 4.654 8 H 0.066 0.934 9 C 0.105 3.895 10 H 0.044 0.956 11 N -0.360 5.360 12 C -0.161 4.161 13 H 0.081 0.919 14 C -0.159 4.159 15 C -0.191 4.191 16 C -0.015 4.015 17 O -0.313 6.313 18 C 0.001 3.999 19 H 0.102 0.898 20 H 0.136 0.864 21 H 0.109 0.891 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.617 -7.283 1.243 8.226 hybrid contribution 0.396 -2.642 -0.324 2.691 sum 4.013 -9.925 0.918 10.745 Atomic orbital electron populations 1.70494 1.06906 1.32778 1.42711 1.25593 0.96633 1.01921 0.93193 0.83615 0.74536 0.75508 0.76753 1.21751 1.21580 1.21580 1.21857 0.93392 0.91273 1.58862 0.93398 1.19147 0.88919 0.92001 0.89470 0.95632 1.59423 1.28955 1.42095 1.05533 1.22542 0.98996 0.95951 0.98574 0.91853 1.21708 0.97581 0.95137 1.01443 1.22165 0.98739 0.98750 0.99433 1.22449 0.95991 0.86742 0.96337 1.87891 1.34371 1.14137 1.94879 1.22647 0.92656 0.88169 0.96453 0.89790 0.86390 0.89061 0.92457 0.92313 0.91849 0.91602 0.93847 0.89884 0.87715 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.51 55.43 0.75 -26.49 15 2 C 0.04 1.04 5.39 -17.82 -0.10 0.94 15 3 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 15 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 7 C -0.62 -16.89 8.03 -34.44 -0.28 -17.17 15 8 H 0.05 1.32 6.74 -52.48 -0.35 0.97 15 9 C 0.21 5.17 1.88 -68.86 -0.13 5.04 15 10 H 0.03 0.68 8.01 -51.93 -0.42 0.27 15 11 N -0.83 -19.09 7.69 -5.65 -0.04 -19.14 15 12 C -0.14 -2.84 2.09 -90.48 -0.19 -3.03 15 13 H 0.06 1.37 8.14 -51.93 -0.42 0.94 15 14 C -0.12 -2.04 4.88 -26.55 -0.13 -2.17 15 15 C -0.15 -2.21 6.14 -26.59 -0.16 -2.37 15 16 C 0.06 0.92 6.84 37.21 0.25 1.17 15 17 O -0.39 -7.34 10.77 -35.23 -0.38 -7.72 15 18 C 0.08 1.54 5.83 37.20 0.22 1.76 15 19 H 0.29 8.83 6.39 -40.82 -0.26 8.57 15 20 H 0.32 7.28 8.99 -39.29 -0.35 6.93 15 21 H 0.30 5.99 7.48 -39.29 -0.29 5.69 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.06 0.95 6.95 -51.93 -0.36 0.59 15 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.10 2.25 6.73 -51.93 -0.35 1.90 15 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 232.53 15.07 3.50 3.50 Total: -1.00 -29.98 232.53 -5.91 -35.89 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.14 Total: 9.37 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.51 Total: -15.82 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.71 Total: -45.62 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.38 Total: -7.72 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.98 -5.91 -35.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259531159.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.636 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds