Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47126 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47414 * 119.99524 * 3 2 1 6 6 H 1.48497 * 109.47413 * 240.00151 * 3 2 1 7 7 C 1.37876 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00686 * 183.82024 * 7 2 1 9 9 C 1.50704 * 119.99342 * 3.82278 * 7 2 1 10 10 C 1.52997 * 112.93800 * 288.12236 * 9 7 2 11 11 C 1.50697 * 109.47379 * 295.04769 * 10 9 7 12 12 O 1.20827 * 119.99700 * 2.61292 * 11 10 9 13 13 O 1.34227 * 120.00307 * 182.60403 * 11 10 9 14 14 C 1.53942 * 113.72984 * 156.41999 * 9 7 2 15 15 N 1.47963 * 86.17599 * 221.91835 * 14 9 7 16 16 C 1.47959 * 90.76603 * 24.69308 * 15 14 9 17 17 H 0.97001 * 120.00026 * 354.99123 * 1 2 3 18 18 H 1.08995 * 109.47035 * 55.05333 * 10 9 7 19 19 H 1.09005 * 109.47097 * 175.04949 * 10 9 7 20 20 H 0.96698 * 117.00370 * 180.02562 * 13 11 10 21 21 H 1.09001 * 113.75951 * 336.23583 * 14 9 7 22 22 H 1.08999 * 113.75727 * 107.60444 * 14 9 7 23 23 H 1.00905 * 110.99808 * 137.58774 * 15 14 9 24 24 H 1.09000 * 113.75574 * 220.99302 * 16 15 14 25 25 H 1.08996 * 113.76034 * 89.62228 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0827 -1.1950 0.0628 9 6 1.2535 -2.4977 -0.0859 10 6 0.4999 -2.8382 1.2013 11 6 1.4877 -3.0671 2.3162 12 8 2.6702 -2.9219 2.1148 13 8 1.0539 -3.4321 3.5328 14 6 2.0946 -3.6616 -0.6406 15 7 0.8897 -4.0327 -1.4150 16 6 0.3999 -2.6377 -1.3592 17 1 -0.4850 0.8368 0.0733 18 1 -0.1606 -2.0122 1.4650 19 1 -0.0910 -3.7413 1.0483 20 1 1.7249 -3.5670 4.2160 21 1 2.9331 -3.3417 -1.2593 22 1 2.3766 -4.3975 0.1124 23 1 1.1327 -4.2931 -2.3591 24 1 -0.6722 -2.5556 -1.1803 25 1 0.7427 -2.0184 -2.1880 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259617190.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = -64.910483 kcal Electronic energy + Delta-G solvation = -11747.098938 eV Core-core repulsion = 9533.494764 eV Total energy + Delta-G solvation = -2213.604174 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.53459 -38.02670 -35.13029 -32.58018 -29.80622 -26.20265 -24.78316 -23.38369 -20.83216 -18.01893 -17.09704 -16.72333 -15.32242 -14.87804 -14.70261 -14.13545 -13.76256 -12.64150 -12.17085 -11.99662 -11.49614 -11.01460 -10.87625 -10.81542 -10.62698 -10.26296 -10.05067 -9.56094 -9.03319 -8.83957 -8.48658 -7.88504 -6.05237 -4.08296 3.28744 3.31262 3.35523 3.40005 4.02887 4.41929 5.22912 5.30400 6.03858 6.13996 6.38429 6.46664 6.55671 6.70172 6.72880 7.01075 7.12987 7.27737 7.31527 7.60382 7.91560 8.24046 8.37932 8.86759 8.95206 9.55825 11.01999 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.019282 C = 0.014913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.926838 B = 1451.810179 C = 1877.131576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.496 4.496 8 H 0.062 0.938 9 C 0.072 3.928 10 C -0.076 4.076 11 C 0.479 3.521 12 O -0.504 6.504 13 O -0.535 6.535 14 C 0.012 3.988 15 N -0.656 5.656 16 C 0.039 3.961 17 H 0.262 0.738 18 H 0.114 0.886 19 H 0.077 0.923 20 H 0.392 0.608 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.296 0.704 24 H 0.073 0.927 25 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -4.153 1.686 4.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.072 3.928 10 C -0.114 4.114 11 C 0.322 3.678 12 O -0.390 6.390 13 O -0.347 6.347 14 C -0.119 4.119 15 N -0.280 5.280 16 C -0.091 4.091 17 H 0.072 0.928 18 H 0.132 0.868 19 H 0.095 0.905 20 H 0.248 0.752 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.270 -4.380 1.754 4.726 hybrid contribution 1.506 1.485 -0.086 2.116 sum 1.236 -2.896 1.668 3.563 Atomic orbital electron populations 1.69873 1.05693 1.27072 1.50482 1.24965 0.94907 0.98948 0.94991 0.86670 0.79630 0.83126 0.78688 1.21352 1.20386 1.20280 1.20973 0.93384 0.89250 1.49789 0.91949 1.19364 0.91485 0.92927 0.89072 1.21184 0.96473 1.02608 0.91148 1.24060 0.90088 0.71613 0.82062 1.90627 1.19143 1.46665 1.82563 1.84632 1.45507 1.81973 1.22608 1.23784 0.92754 0.98087 0.97233 1.66967 1.21186 1.24267 1.15536 1.23529 1.00186 0.86356 0.99044 0.92811 0.86792 0.90509 0.75185 0.92733 0.91975 0.89322 0.90892 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 11.66 55.43 0.65 -23.47 15 2 C 0.06 1.70 5.32 -17.82 -0.09 1.60 15 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 15 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 7 C -0.50 -13.35 7.05 -34.44 -0.24 -13.59 15 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 15 9 C 0.07 1.75 0.18 -154.72 -0.03 1.72 15 10 C -0.08 -1.73 5.14 -27.89 -0.14 -1.87 15 11 C 0.48 10.44 7.79 36.00 0.28 10.72 15 12 O -0.50 -12.19 14.96 -18.75 -0.28 -12.47 15 13 O -0.54 -9.47 13.42 -39.25 -0.53 -10.00 15 14 C 0.01 0.25 7.40 -2.76 -0.02 0.23 15 15 N -0.66 -13.37 8.37 -116.78 -0.98 -14.35 15 16 C 0.04 0.88 7.18 -2.77 -0.02 0.86 15 17 H 0.26 6.86 8.32 -40.82 -0.34 6.52 15 18 H 0.11 2.78 7.16 -51.93 -0.37 2.41 15 19 H 0.08 1.62 8.02 -51.93 -0.42 1.21 15 20 H 0.39 4.98 9.10 45.56 0.41 5.40 15 21 H 0.05 1.19 8.09 -51.93 -0.42 0.77 15 22 H 0.06 1.36 7.32 -51.93 -0.38 0.98 15 23 H 0.30 5.33 8.91 -39.29 -0.35 4.98 15 24 H 0.07 1.69 8.10 -51.93 -0.42 1.27 15 25 H 0.06 1.30 8.09 -51.93 -0.42 0.88 15 LS Contribution 220.25 15.07 3.32 3.32 Total: -1.00 -29.16 220.25 -5.02 -34.18 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -1.91 Total: 6.90 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.27 Total: -0.33 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.33 Total: -37.82 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.81 Total: -22.47 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.16 -5.02 -34.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259617190.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.734 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds