Wall clock time and date at job start Mon Mar 30 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47126 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47414 * 119.99524 * 3 2 1 6 6 H 1.48497 * 109.47413 * 240.00151 * 3 2 1 7 7 C 1.37876 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00686 * 183.82024 * 7 2 1 9 9 C 1.50704 * 119.99342 * 3.82278 * 7 2 1 10 10 C 1.52997 * 112.93800 * 288.12236 * 9 7 2 11 11 C 1.50697 * 109.47379 * 295.04769 * 10 9 7 12 12 O 1.20827 * 119.99700 * 2.61292 * 11 10 9 13 13 O 1.34227 * 120.00307 * 182.60403 * 11 10 9 14 14 C 1.53942 * 113.72984 * 156.41999 * 9 7 2 15 15 N 1.47963 * 86.17599 * 221.91835 * 14 9 7 16 16 C 1.47959 * 90.76603 * 24.69308 * 15 14 9 17 17 H 0.97001 * 120.00026 * 354.99123 * 1 2 3 18 18 H 1.08995 * 109.47035 * 55.05333 * 10 9 7 19 19 H 1.09005 * 109.47097 * 175.04949 * 10 9 7 20 20 H 0.96698 * 117.00370 * 180.02562 * 13 11 10 21 21 H 1.09001 * 113.75951 * 336.23583 * 14 9 7 22 22 H 1.08999 * 113.75727 * 107.60444 * 14 9 7 23 23 H 1.00905 * 110.99808 * 137.58774 * 15 14 9 24 24 H 1.09000 * 113.75574 * 220.99302 * 16 15 14 25 25 H 1.08996 * 113.76034 * 89.62228 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0827 -1.1950 0.0628 9 6 1.2535 -2.4977 -0.0859 10 6 0.4999 -2.8382 1.2013 11 6 1.4877 -3.0671 2.3162 12 8 2.6702 -2.9219 2.1148 13 8 1.0539 -3.4321 3.5328 14 6 2.0946 -3.6616 -0.6406 15 7 0.8897 -4.0327 -1.4150 16 6 0.3999 -2.6377 -1.3592 17 1 -0.4850 0.8368 0.0733 18 1 -0.1606 -2.0122 1.4650 19 1 -0.0910 -3.7413 1.0483 20 1 1.7249 -3.5670 4.2160 21 1 2.9331 -3.3417 -1.2593 22 1 2.3766 -4.3975 0.1124 23 1 1.1327 -4.2931 -2.3591 24 1 -0.6722 -2.5556 -1.1803 25 1 0.7427 -2.0184 -2.1880 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259617190.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:19 Heat of formation + Delta-G solvation = -87.651718 kcal Electronic energy + Delta-G solvation = -11748.085072 eV Core-core repulsion = 9533.494764 eV Total energy + Delta-G solvation = -2214.590308 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.25666 -39.75168 -36.75464 -34.57914 -31.62707 -28.12779 -26.57327 -25.25671 -22.49689 -19.92356 -18.74762 -18.56276 -17.10094 -16.71331 -16.47674 -15.99487 -15.53015 -14.40598 -13.96802 -13.76972 -13.29163 -12.88446 -12.75356 -12.69116 -12.37640 -12.12745 -11.87817 -11.33961 -10.89781 -10.74147 -10.47484 -9.64415 -8.08097 -6.15922 1.41170 1.42854 1.49725 1.57009 2.43468 2.49241 3.18456 3.55858 4.28770 4.33482 4.63820 4.70906 4.81912 4.94772 4.98021 5.20553 5.32052 5.47179 5.74367 5.85223 5.86327 6.39780 6.60965 6.84197 7.32523 7.49439 8.97108 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.019282 C = 0.014913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.926838 B = 1451.810179 C = 1877.131576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.939 3.061 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.042 0.958 9 C 0.054 3.946 10 C -0.074 4.074 11 C 0.485 3.515 12 O -0.533 6.533 13 O -0.522 6.522 14 C 0.019 3.981 15 N -0.640 5.640 16 C 0.046 3.954 17 H 0.263 0.737 18 H 0.096 0.904 19 H 0.093 0.907 20 H 0.417 0.583 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.315 0.685 24 H 0.067 0.933 25 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 -4.537 1.895 4.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.173 4.173 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.054 3.946 10 C -0.112 4.112 11 C 0.329 3.671 12 O -0.422 6.422 13 O -0.336 6.336 14 C -0.111 4.111 15 N -0.265 5.265 16 C -0.084 4.084 17 H 0.072 0.928 18 H 0.114 0.886 19 H 0.111 0.889 20 H 0.277 0.723 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.127 0.873 24 H 0.085 0.915 25 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.323 -4.782 1.979 5.185 hybrid contribution 1.519 1.559 -0.098 2.179 sum 1.196 -3.223 1.882 3.919 Atomic orbital electron populations 1.69940 1.06263 1.27532 1.50742 1.25478 0.95646 1.01170 0.94968 0.85913 0.78671 0.80503 0.78291 1.20623 1.20995 1.20006 1.21074 0.92594 0.90979 1.50059 0.94021 1.19517 0.92294 0.92595 0.90235 1.21027 0.96388 1.02553 0.91198 1.23792 0.89256 0.71134 0.82960 1.90623 1.20114 1.48088 1.83328 1.84543 1.46160 1.80989 1.21883 1.23654 0.92848 0.97301 0.97281 1.66863 1.20281 1.22557 1.16797 1.23323 0.99513 0.87424 0.98126 0.92797 0.88634 0.88929 0.72256 0.92933 0.91748 0.87280 0.91503 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.56 11.66 21.45 0.25 -48.31 15 2 C 0.03 1.45 5.32 84.66 0.45 1.90 15 3 Si 0.94 43.30 29.54 68.60 2.03 45.32 15 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 15 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 7 C -0.51 -27.35 7.05 25.60 0.18 -27.17 15 8 H 0.04 2.37 7.82 -2.92 -0.02 2.34 15 9 C 0.05 2.59 0.18 -52.28 -0.01 2.58 15 10 C -0.07 -3.27 5.14 29.85 0.15 -3.12 15 11 C 0.48 20.43 7.79 71.24 0.55 20.99 15 12 O -0.53 -25.27 14.96 21.96 0.33 -24.94 15 13 O -0.52 -17.18 13.42 -51.39 -0.69 -17.87 15 14 C 0.02 0.83 7.40 86.41 0.64 1.47 15 15 N -0.64 -24.90 8.37 -523.39 -4.38 -29.28 15 16 C 0.05 2.07 7.18 86.41 0.62 2.69 15 17 H 0.26 13.59 8.32 -92.71 -0.77 12.82 15 18 H 0.10 4.62 7.16 -2.39 -0.02 4.60 15 19 H 0.09 3.76 8.02 -2.38 -0.02 3.74 15 20 H 0.42 9.38 9.10 -74.06 -0.67 8.70 15 21 H 0.05 2.24 8.09 -2.39 -0.02 2.22 15 22 H 0.06 2.72 7.32 -2.39 -0.02 2.70 15 23 H 0.32 10.61 8.91 -89.69 -0.80 9.81 15 24 H 0.07 3.05 8.10 -2.39 -0.02 3.03 15 25 H 0.04 2.03 8.09 -2.39 -0.02 2.01 15 Total: -1.00 -59.78 220.25 -0.14 -59.91 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.26 Total: 15.83 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 2.59 Total: -0.66 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -4.13 Total: -77.59 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.36 Total: -42.81 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -59.78 -0.14 -59.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259617190.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.738 kcal (2) G-P(sol) polarization free energy of solvation -59.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds