Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.06452 * 2 1 4 4 N 1.48125 * 109.95513 * 238.67278 * 2 1 3 5 5 C 1.48529 * 105.82360 * 215.28894 * 4 2 1 6 6 C 1.54935 * 103.23046 * 39.26424 * 5 4 2 7 7 C 1.53996 * 109.91519 * 121.20120 * 2 1 3 8 8 O 1.42911 * 110.30845 * 239.59508 * 7 2 1 9 9 C 1.50694 * 110.30926 * 1.66522 * 7 2 1 10 10 H 1.08000 * 120.00563 * 358.61020 * 9 7 2 11 11 C 1.37885 * 119.99902 * 178.61183 * 9 7 2 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 H 1.08996 * 109.47235 * 298.79827 * 1 2 3 18 18 H 1.08999 * 109.47087 * 58.79827 * 1 2 3 19 19 H 1.09003 * 109.47005 * 178.79566 * 1 2 3 20 20 H 1.08997 * 109.47652 * 181.20248 * 3 2 1 21 21 H 1.09000 * 109.47223 * 301.20284 * 3 2 1 22 22 H 1.09006 * 109.47423 * 61.20050 * 3 2 1 23 23 H 1.00901 * 111.04189 * 335.83207 * 4 2 1 24 24 H 1.09007 * 110.66541 * 280.82549 * 5 4 2 25 25 H 1.09004 * 110.66388 * 157.70222 * 5 4 2 26 26 H 1.09001 * 110.72419 * 204.23191 * 6 5 4 27 27 H 1.08994 * 110.87939 * 81.01107 * 6 5 4 28 28 H 0.96700 * 113.99671 * 181.39299 * 8 7 2 29 29 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 7 2.0355 -0.7239 -1.1893 5 6 3.2702 -1.4200 -0.7453 6 6 2.9074 -1.9116 0.6786 7 6 2.0546 -0.7501 1.2384 8 8 2.8613 0.1168 2.0385 9 6 0.9045 -1.2892 2.0494 10 1 -0.1119 -1.1014 1.7364 11 6 1.1500 -2.0224 3.1911 12 7 2.3877 -2.2515 3.5720 13 14 -0.2756 -2.6901 4.1967 14 1 -0.6691 -1.6906 5.2221 15 1 -1.4289 -2.9611 3.3013 16 1 0.1380 -3.9495 4.8661 17 1 -0.3633 0.4950 0.9005 18 1 -0.3633 0.5324 -0.8790 19 1 -0.3633 -1.0275 -0.0216 20 1 3.1446 1.4260 -0.0216 21 1 1.6795 1.9611 -0.8790 22 1 1.7145 1.9483 0.9006 23 1 1.3516 -1.3828 -1.5302 24 1 4.1111 -0.7273 -0.7106 25 1 3.4922 -2.2638 -1.3987 26 1 3.8065 -2.0538 1.2782 27 1 2.3248 -2.8318 0.6352 28 1 3.2370 -0.3076 2.8220 29 1 2.5603 -2.7670 4.3754 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -49.378199 kcal Electronic energy + Delta-G solvation = -12391.304114 eV Core-core repulsion = 10314.206565 eV Total energy + Delta-G solvation = -2077.097549 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.68600 -34.11439 -32.10556 -31.47571 -28.14228 -26.79327 -24.85606 -23.12156 -20.28261 -18.20335 -16.58248 -15.28592 -15.08299 -14.35130 -13.87128 -13.20749 -12.59221 -12.39700 -11.69625 -11.54577 -11.46776 -11.17467 -11.08190 -10.82947 -10.43788 -10.38409 -10.18933 -9.95994 -9.55921 -8.99815 -8.61901 -7.99122 -7.69574 -6.18153 -4.25106 3.21796 3.29250 3.31554 4.31344 5.07194 5.10025 5.81020 5.86337 5.98488 6.18299 6.34083 6.40818 6.52642 6.55101 6.72144 6.78005 6.80401 7.01420 7.17208 7.24510 7.44562 7.56717 7.72130 7.85588 8.08641 8.28287 8.77323 9.43516 9.58270 10.88868 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.048475 B = 0.016840 C = 0.015548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.480703 B = 1662.311768 C = 1800.423600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.103 3.897 3 C -0.102 4.102 4 N -0.671 5.671 5 C 0.036 3.964 6 C -0.151 4.151 7 C 0.237 3.763 8 O -0.585 6.585 9 C -0.543 4.543 10 H 0.075 0.925 11 C 0.068 3.932 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.287 1.287 17 H 0.065 0.935 18 H 0.034 0.966 19 H 0.057 0.943 20 H 0.049 0.951 21 H 0.034 0.966 22 H 0.054 0.946 23 H 0.327 0.673 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.377 0.623 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 0.995 -4.415 4.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.012 3.988 3 C -0.160 4.160 4 N -0.299 5.299 5 C -0.094 4.094 6 C -0.191 4.191 7 C 0.196 3.804 8 O -0.393 6.393 9 C -0.581 4.581 10 H 0.093 0.907 11 C -0.134 4.134 12 N -0.538 5.538 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.199 1.199 16 H -0.212 1.212 17 H 0.084 0.916 18 H 0.053 0.947 19 H 0.076 0.924 20 H 0.068 0.932 21 H 0.053 0.947 22 H 0.073 0.927 23 H 0.142 0.858 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.227 0.773 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.728 1.919 -5.086 5.485 hybrid contribution -0.846 -1.772 1.739 2.623 sum -1.575 0.146 -3.347 3.702 Atomic orbital electron populations 1.21992 0.95022 1.01398 1.00216 1.21649 0.93746 0.94666 0.88692 1.21326 1.00669 0.94772 0.99273 1.63020 1.07044 1.28872 1.30949 1.23095 0.93735 0.96423 0.96127 1.23499 1.00721 1.00181 0.94718 1.19723 0.88056 0.84928 0.87685 1.86140 1.69492 1.42304 1.41386 1.22129 0.94107 1.32800 1.09031 0.90658 1.25065 0.95772 0.95214 0.97323 1.69691 1.18559 1.40701 1.24824 0.86539 0.82481 0.78343 0.80302 1.20537 1.19874 1.21241 0.91589 0.94685 0.92373 0.93230 0.94742 0.92654 0.85815 0.91485 0.92729 0.91798 0.92375 0.77282 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 6.97 37.16 0.26 -2.32 15 2 C 0.10 2.23 1.16 -130.41 -0.15 2.08 15 3 C -0.10 -2.13 7.88 37.16 0.29 -1.84 15 4 N -0.67 -13.30 7.04 -96.32 -0.68 -13.98 15 5 C 0.04 0.71 7.54 -1.90 -0.01 0.70 15 6 C -0.15 -3.54 5.40 -24.87 -0.13 -3.68 15 7 C 0.24 5.84 0.96 -90.42 -0.09 5.75 15 8 O -0.58 -15.20 11.16 -35.23 -0.39 -15.59 15 9 C -0.54 -14.26 7.24 -34.44 -0.25 -14.51 15 10 H 0.08 1.93 4.70 -52.49 -0.25 1.69 15 11 C 0.07 1.80 5.26 -17.82 -0.09 1.70 15 12 N -0.90 -24.19 10.87 55.43 0.60 -23.58 15 13 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 15 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 17 H 0.07 1.37 7.19 -51.93 -0.37 1.00 15 18 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.06 1.17 7.01 -51.93 -0.36 0.81 15 20 H 0.05 1.06 7.89 -51.93 -0.41 0.65 15 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.05 1.18 7.85 -51.93 -0.41 0.77 15 23 H 0.33 6.05 8.39 -39.29 -0.33 5.72 15 24 H 0.07 1.35 8.14 -51.92 -0.42 0.93 15 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.06 1.58 8.01 -51.93 -0.42 1.16 15 27 H 0.06 1.42 7.85 -51.93 -0.41 1.01 15 28 H 0.38 10.09 7.19 45.56 0.33 10.42 15 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 229.30 15.07 3.46 3.46 Total: -1.00 -26.97 229.30 -5.67 -32.64 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.45 Total: 13.48 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.18 Total: -12.11 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.08 Total: -37.56 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.39 Total: -15.59 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -26.97 -5.67 -32.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.738 kcal (2) G-P(sol) polarization free energy of solvation -26.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds