Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.06452 * 2 1 4 4 N 1.48125 * 109.95513 * 238.67278 * 2 1 3 5 5 C 1.48529 * 105.82360 * 215.28894 * 4 2 1 6 6 C 1.54935 * 103.23046 * 39.26424 * 5 4 2 7 7 C 1.53996 * 109.91519 * 121.20120 * 2 1 3 8 8 O 1.42911 * 110.30845 * 239.59508 * 7 2 1 9 9 C 1.50694 * 110.30926 * 1.66522 * 7 2 1 10 10 H 1.08000 * 120.00563 * 358.61020 * 9 7 2 11 11 C 1.37885 * 119.99902 * 178.61183 * 9 7 2 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 H 1.08996 * 109.47235 * 298.79827 * 1 2 3 18 18 H 1.08999 * 109.47087 * 58.79827 * 1 2 3 19 19 H 1.09003 * 109.47005 * 178.79566 * 1 2 3 20 20 H 1.08997 * 109.47652 * 181.20248 * 3 2 1 21 21 H 1.09000 * 109.47223 * 301.20284 * 3 2 1 22 22 H 1.09006 * 109.47423 * 61.20050 * 3 2 1 23 23 H 1.00901 * 111.04189 * 335.83207 * 4 2 1 24 24 H 1.09007 * 110.66541 * 280.82549 * 5 4 2 25 25 H 1.09004 * 110.66388 * 157.70222 * 5 4 2 26 26 H 1.09001 * 110.72419 * 204.23191 * 6 5 4 27 27 H 1.08994 * 110.87939 * 81.01107 * 6 5 4 28 28 H 0.96700 * 113.99671 * 181.39299 * 8 7 2 29 29 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 7 2.0355 -0.7239 -1.1893 5 6 3.2702 -1.4200 -0.7453 6 6 2.9074 -1.9116 0.6786 7 6 2.0546 -0.7501 1.2384 8 8 2.8613 0.1168 2.0385 9 6 0.9045 -1.2892 2.0494 10 1 -0.1119 -1.1014 1.7364 11 6 1.1500 -2.0224 3.1911 12 7 2.3877 -2.2515 3.5720 13 14 -0.2756 -2.6901 4.1967 14 1 -0.6691 -1.6906 5.2221 15 1 -1.4289 -2.9611 3.3013 16 1 0.1380 -3.9495 4.8661 17 1 -0.3633 0.4950 0.9005 18 1 -0.3633 0.5324 -0.8790 19 1 -0.3633 -1.0275 -0.0216 20 1 3.1446 1.4260 -0.0216 21 1 1.6795 1.9611 -0.8790 22 1 1.7145 1.9483 0.9006 23 1 1.3516 -1.3828 -1.5302 24 1 4.1111 -0.7273 -0.7106 25 1 3.4922 -2.2638 -1.3987 26 1 3.8065 -2.0538 1.2782 27 1 2.3248 -2.8318 0.6352 28 1 3.2370 -0.3076 2.8220 29 1 2.5603 -2.7670 4.3754 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259736753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -69.565470 kcal Electronic energy + Delta-G solvation = -12392.179500 eV Core-core repulsion = 10314.206565 eV Total energy + Delta-G solvation = -2077.972935 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.46056 -36.02281 -34.13232 -33.15732 -30.01687 -28.48842 -26.66598 -24.92459 -22.07483 -20.00134 -18.54537 -17.13017 -16.84516 -16.24422 -15.73585 -14.87377 -14.38120 -14.24299 -13.41781 -13.34322 -13.29002 -13.00683 -12.79095 -12.66726 -12.25455 -12.06699 -11.93350 -11.72322 -11.42442 -10.85063 -10.58991 -9.96353 -9.38258 -8.17840 -6.30968 1.38337 1.41188 1.49077 2.38872 3.07429 3.43823 4.02238 4.17933 4.30387 4.50929 4.62453 4.69948 4.84695 4.96370 5.00387 5.07664 5.13030 5.31388 5.45294 5.50853 5.58693 5.66939 5.86498 5.99145 6.23654 6.60429 6.78989 7.40005 7.51091 8.87389 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.048475 B = 0.016840 C = 0.015548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.480703 B = 1662.311768 C = 1800.423600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.098 3.902 3 C -0.096 4.096 4 N -0.659 5.659 5 C 0.045 3.955 6 C -0.146 4.146 7 C 0.219 3.781 8 O -0.591 6.591 9 C -0.558 4.558 10 H 0.079 0.921 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.953 3.047 14 H -0.280 1.280 15 H -0.267 1.267 16 H -0.286 1.286 17 H 0.052 0.948 18 H 0.063 0.937 19 H 0.053 0.947 20 H 0.037 0.963 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.337 0.663 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.369 0.631 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 1.017 -5.504 5.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.007 3.993 3 C -0.154 4.154 4 N -0.288 5.288 5 C -0.084 4.084 6 C -0.186 4.186 7 C 0.178 3.822 8 O -0.399 6.399 9 C -0.596 4.596 10 H 0.097 0.903 11 C -0.177 4.177 12 N -0.559 5.559 13 Si 0.780 3.220 14 H -0.206 1.206 15 H -0.192 1.192 16 H -0.212 1.212 17 H 0.071 0.929 18 H 0.082 0.918 19 H 0.072 0.928 20 H 0.056 0.944 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.153 0.847 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.218 0.782 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.590 1.944 -6.195 6.685 hybrid contribution -0.562 -1.770 2.071 2.781 sum -2.152 0.174 -4.125 4.656 Atomic orbital electron populations 1.21892 0.93726 1.01420 1.00920 1.21695 0.94826 0.94891 0.87841 1.21249 0.99866 0.94463 0.99801 1.62990 1.07141 1.29023 1.29620 1.23049 0.93747 0.97265 0.94357 1.23340 0.99293 0.99205 0.96730 1.20066 0.87797 0.85747 0.88574 1.86145 1.69732 1.42803 1.41214 1.22474 0.94845 1.32783 1.09524 0.90346 1.25757 0.97828 0.95660 0.98408 1.69793 1.19930 1.41120 1.25063 0.85629 0.80025 0.77522 0.78861 1.20587 1.19177 1.21223 0.92898 0.91820 0.92788 0.94402 0.92264 0.93908 0.84672 0.91615 0.89760 0.93995 0.93993 0.78237 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 6.97 71.98 0.50 -4.11 15 2 C 0.10 4.09 1.16 3.63 0.00 4.09 15 3 C -0.10 -3.82 7.88 71.98 0.57 -3.26 15 4 N -0.66 -24.37 7.04 -458.65 -3.23 -27.60 15 5 C 0.05 1.72 7.54 86.65 0.65 2.37 15 6 C -0.15 -6.78 5.40 31.80 0.17 -6.61 15 7 C 0.22 10.71 0.96 -10.66 -0.01 10.70 15 8 O -0.59 -31.03 11.16 -148.98 -1.66 -32.70 15 9 C -0.56 -29.15 7.24 25.60 0.19 -28.97 15 10 H 0.08 3.96 4.70 -2.91 -0.01 3.95 15 11 C 0.02 1.21 5.26 84.66 0.45 1.65 15 12 N -0.92 -49.96 10.87 21.45 0.23 -49.73 15 13 Si 0.95 42.28 29.54 68.60 2.03 44.30 15 14 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 16 H -0.29 -12.60 7.11 99.48 0.71 -11.89 15 17 H 0.05 2.12 7.19 -2.39 -0.02 2.10 15 18 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 19 H 0.05 2.06 7.01 -2.39 -0.02 2.04 15 20 H 0.04 1.56 7.89 -2.39 -0.02 1.54 15 21 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.04 1.78 7.85 -2.38 -0.02 1.76 15 23 H 0.34 11.43 8.39 -89.69 -0.75 10.68 15 24 H 0.07 2.53 8.14 -2.38 -0.02 2.51 15 25 H 0.08 2.71 8.14 -2.38 -0.02 2.69 15 26 H 0.04 2.09 8.01 -2.39 -0.02 2.07 15 27 H 0.04 2.04 7.85 -2.39 -0.02 2.02 15 28 H 0.37 20.23 7.19 -74.06 -0.53 19.70 15 29 H 0.26 13.82 8.31 -92.71 -0.77 13.05 15 Total: -1.00 -55.75 229.30 -0.25 -56.00 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.14 Total: 33.84 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 2.52 Total: -24.13 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -3.00 Total: -77.33 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.66 Total: -32.70 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -55.75 -0.25 -56.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.563 kcal (2) G-P(sol) polarization free energy of solvation -55.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds