Wall clock time and date at job start Mon Mar 30 2020 02:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52999 * 113.00311 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47287 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.46946 * 179.97438 * 12 11 10 14 14 C 1.54036 * 113.81490 * 48.17123 * 10 9 7 15 15 O 1.44453 * 85.42838 * 223.23885 * 14 10 9 16 16 C 1.44179 * 93.37554 * 24.08653 * 15 14 10 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 19 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 20 20 H 1.08998 * 109.46850 * 300.00355 * 11 10 9 21 21 H 1.09000 * 109.47155 * 59.99661 * 11 10 9 22 22 H 1.08998 * 109.46650 * 299.99750 * 12 11 10 23 23 H 1.08994 * 109.47020 * 60.00294 * 12 11 10 24 24 H 1.00902 * 111.00355 * 179.97438 * 13 12 11 25 25 H 1.00896 * 111.00260 * 303.95528 * 13 12 11 26 26 H 1.09000 * 113.86846 * 337.34389 * 14 10 9 27 27 H 1.09002 * 113.86618 * 109.05369 * 14 10 9 28 28 H 1.08998 * 113.86747 * 221.76904 * 16 15 14 29 29 H 1.09006 * 113.85902 * 90.06512 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.5631 -5.0317 0.0012 12 6 2.6270 -6.1313 0.0018 13 7 1.9721 -7.4462 0.0030 14 6 3.3636 -3.5242 1.0506 15 8 4.2476 -3.9699 -0.0014 16 6 3.3636 -3.5243 -1.0496 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5567 0.8903 19 1 0.6246 -2.5571 -0.8897 20 1 0.9415 -5.1276 0.8914 21 1 0.9408 -5.1281 -0.8885 22 1 3.2489 -6.0355 -0.8883 23 1 3.2488 -6.0347 0.8917 24 1 2.6541 -8.1899 0.0030 25 1 1.3402 -7.5347 0.7845 26 1 3.5428 -2.4982 1.3720 27 1 3.2770 -4.2242 1.8817 28 1 3.2769 -4.2242 -1.8806 29 1 3.5428 -2.4982 -1.3709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814874.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:51 Heat of formation + Delta-G solvation = -48.207046 kcal Electronic energy + Delta-G solvation = -11737.127419 eV Core-core repulsion = 9660.080655 eV Total energy + Delta-G solvation = -2077.046764 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.71933 -36.04600 -35.31258 -32.98451 -29.73712 -27.37605 -26.82818 -25.16370 -22.86660 -19.67934 -18.25418 -17.11737 -17.01875 -16.78561 -16.37754 -15.70986 -15.36832 -14.55335 -14.30315 -13.82954 -13.37790 -13.20954 -12.81425 -12.71792 -12.36158 -12.21852 -12.03162 -11.28199 -11.14735 -10.80910 -10.52858 -10.17377 -9.55180 -8.18785 -6.27416 1.39470 1.41565 1.53006 2.40990 2.96315 3.15118 3.52187 3.64109 4.16294 4.24361 4.39413 4.44789 4.64427 4.72404 4.75791 4.97773 5.14084 5.18159 5.32165 5.36331 5.38160 5.57759 5.61934 5.83293 6.24648 6.25644 6.65935 6.87431 7.41239 8.93457 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.068190 B = 0.010829 C = 0.009844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.518630 B = 2585.145811 C = 2843.773901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.039 3.961 10 C -0.119 4.119 11 C -0.085 4.085 12 C 0.076 3.924 13 N -0.858 5.858 14 C 0.049 3.951 15 O -0.397 6.397 16 C 0.048 3.952 17 H 0.262 0.738 18 H -0.005 1.005 19 H -0.006 1.006 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.030 0.970 24 H 0.350 0.650 25 H 0.345 0.655 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -9.042 1.188 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.054 4.054 13 N -0.389 5.389 14 C -0.027 4.027 15 O -0.316 6.316 16 C -0.028 4.028 17 H 0.071 0.929 18 H 0.014 0.986 19 H 0.012 0.988 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.163 0.837 25 H 0.158 0.842 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.147 -8.843 0.483 10.244 hybrid contribution 0.254 1.128 0.891 1.460 sum 5.402 -7.715 1.374 9.518 Atomic orbital electron populations 1.70101 1.07717 1.27516 1.51956 1.25867 0.95568 1.02947 0.95050 0.85529 0.79217 0.79532 0.77594 1.18665 1.20716 1.20655 1.21652 0.93481 0.91610 1.49747 0.91549 1.18888 0.93790 0.92076 0.95097 1.23547 0.96466 0.96169 0.95815 1.21202 0.97568 0.91396 1.02132 1.21666 0.94868 0.88256 1.00652 1.58698 1.24230 1.03907 1.52051 1.24106 0.86873 0.99823 0.91946 1.89508 1.44953 1.79436 1.17694 1.24056 0.86905 0.99811 0.92039 0.92922 0.98643 0.98773 0.91868 0.91907 0.91537 0.95188 0.83683 0.84249 0.90599 0.88818 0.88880 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.45 0.28 -55.28 15 2 C 0.00 0.20 5.46 84.66 0.46 0.66 15 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 15 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 7 C -0.53 -28.37 7.30 25.60 0.19 -28.18 15 8 H 0.07 3.45 5.45 -2.91 -0.02 3.43 15 9 C 0.04 1.95 4.75 29.85 0.14 2.10 15 10 C -0.12 -4.72 1.38 -51.48 -0.07 -4.79 15 11 C -0.09 -2.85 5.19 30.59 0.16 -2.69 15 12 C 0.08 2.16 5.50 86.30 0.47 2.63 15 13 N -0.86 -20.09 9.62 -186.73 -1.80 -21.89 15 14 C 0.05 1.83 7.42 72.30 0.54 2.36 15 15 O -0.40 -14.90 10.87 -148.98 -1.62 -16.52 15 16 C 0.05 1.83 7.41 72.30 0.54 2.37 15 17 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 18 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 19 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 15 20 H 0.06 2.05 8.14 -2.39 -0.02 2.04 15 21 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.07 2.00 6.53 -2.39 -0.02 1.98 15 23 H 0.03 0.85 6.53 -2.39 -0.02 0.84 15 24 H 0.35 6.62 9.08 -89.69 -0.81 5.81 15 25 H 0.34 7.15 8.99 -89.70 -0.81 6.34 15 26 H 0.08 3.12 6.38 -2.39 -0.02 3.11 15 27 H 0.09 3.01 7.32 -2.39 -0.02 2.99 15 28 H 0.09 3.11 7.33 -2.39 -0.02 3.09 15 29 H 0.08 3.14 6.37 -2.38 -0.02 3.13 15 Total: -1.00 -60.81 233.91 0.86 -59.95 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.46 Total: 13.77 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 2.43 Total: -25.55 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -1.51 Total: -77.17 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -1.62 Total: -16.52 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -60.81 0.86 -59.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814874.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.740 kcal (2) G-P(sol) polarization free energy of solvation -60.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds