Wall clock time and date at job start Mon Mar 30 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.47736 * 299.99673 * 9 7 2 11 11 C 1.53089 * 109.48134 * 179.97438 * 9 7 2 12 12 C 1.53182 * 109.16254 * 297.62687 * 11 9 7 13 13 C 1.53172 * 109.03546 * 303.01573 * 12 11 9 14 14 C 1.53097 * 109.16320 * 56.98592 * 13 12 11 15 15 H 1.08995 * 109.48105 * 62.37995 * 14 13 12 16 16 C 1.52997 * 109.48082 * 182.40980 * 14 13 12 17 17 N 1.46902 * 109.46864 * 184.99966 * 16 14 13 18 18 O 1.42908 * 109.47720 * 60.02104 * 9 7 2 19 19 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.52323 * 57.52902 * 11 9 7 21 21 H 1.09004 * 109.52354 * 177.65886 * 11 9 7 22 22 H 1.08996 * 109.54407 * 62.88611 * 12 11 9 23 23 H 1.09006 * 109.54239 * 183.06266 * 12 11 9 24 24 H 1.09001 * 109.52384 * 176.88443 * 13 12 11 25 25 H 1.08999 * 109.52808 * 297.08079 * 13 12 11 26 26 H 1.08999 * 109.47021 * 304.99157 * 16 14 13 27 27 H 1.08997 * 109.47573 * 64.99792 * 16 14 13 28 28 H 1.00904 * 111.00259 * 56.04578 * 17 16 14 29 29 H 1.00908 * 110.99792 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8754 -0.6797 -0.8894 11 6 4.0222 -2.6372 -0.0001 12 6 3.5568 -3.3353 1.2816 13 6 4.0571 -2.5419 2.4925 14 6 3.5452 -1.1023 2.3964 15 1 2.4557 -1.1011 2.4275 16 6 4.0901 -0.2875 3.5711 17 7 3.5046 1.0595 3.5461 18 8 3.9877 -0.5216 1.1677 19 1 -0.4850 0.8400 -0.0004 20 1 3.6240 -3.1644 -0.8671 21 1 5.1114 -2.6383 -0.0416 22 1 2.4679 -3.3785 1.2985 23 1 3.9624 -4.3466 1.3138 24 1 3.6840 -3.0008 3.4081 25 1 5.1471 -2.5409 2.5024 26 1 3.8283 -0.7801 4.5075 27 1 5.1746 -0.2138 3.4902 28 1 2.4965 1.0159 3.5550 29 1 3.8488 1.6177 4.3131 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259839770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:57 Heat of formation + Delta-G solvation = -56.887871 kcal Electronic energy + Delta-G solvation = -12252.756145 eV Core-core repulsion = 10175.332952 eV Total energy + Delta-G solvation = -2077.423193 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.49865 -34.24898 -32.57822 -32.19618 -30.03803 -26.23120 -24.47987 -22.04955 -20.92349 -18.85046 -16.83027 -15.56149 -15.04799 -14.47737 -14.08166 -13.92481 -13.58104 -12.75291 -12.43513 -12.14229 -11.90296 -11.61726 -11.22723 -10.47049 -10.36685 -10.18466 -9.88381 -9.68185 -9.54441 -8.70146 -8.52809 -8.05716 -7.93721 -6.00990 -4.11346 3.62111 3.71104 3.86533 4.68438 4.88420 5.03876 5.41768 5.59094 5.72137 5.73683 5.94607 5.97539 6.21803 6.25631 6.32761 6.41922 6.58746 6.84853 6.88129 6.98531 7.10997 7.42989 7.63432 7.74088 7.92540 8.33160 8.79890 8.98730 9.63467 11.08180 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.023132 C = 0.016685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.188673 B = 1210.128877 C = 1677.742373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.082 3.918 3 Si 0.897 3.103 4 H -0.240 1.240 5 H -0.316 1.316 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.170 3.830 10 H 0.062 0.938 11 C -0.131 4.131 12 C -0.109 4.109 13 C -0.140 4.140 14 C 0.101 3.899 15 H 0.070 0.930 16 C 0.071 3.929 17 N -0.837 5.837 18 O -0.380 6.380 19 H 0.262 0.738 20 H 0.059 0.941 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.342 0.658 29 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -1.942 6.372 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.122 4.122 3 Si 0.725 3.275 4 H -0.163 1.163 5 H -0.245 1.245 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.090 0.910 9 C 0.114 3.886 10 H 0.079 0.921 11 C -0.169 4.169 12 C -0.147 4.147 13 C -0.178 4.178 14 C 0.043 3.957 15 H 0.088 0.912 16 C -0.060 4.060 17 N -0.367 5.367 18 O -0.300 6.300 19 H 0.072 0.928 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.335 -1.620 5.670 9.411 hybrid contribution -0.272 0.250 0.835 0.913 sum 7.063 -1.370 6.504 9.699 Atomic orbital electron populations 1.69989 1.06768 1.27269 1.49591 1.25035 0.94627 1.00108 0.92425 0.86498 0.78564 0.81456 0.80935 1.16340 1.24513 1.19892 1.21422 0.89620 0.94581 1.52917 0.91022 1.20263 0.94636 0.88551 0.85160 0.92081 1.21980 0.98409 0.99203 0.97336 1.21434 1.01902 0.96630 0.94722 1.22063 1.00202 0.97419 0.98114 1.21661 0.99206 0.89623 0.85240 0.91221 1.21824 0.99641 0.89085 0.95435 1.58646 1.12589 1.14078 1.51376 1.87836 1.73607 1.55317 1.13252 0.92842 0.92233 0.93949 0.90908 0.93896 0.92704 0.92647 0.95641 0.91370 0.84450 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 15 2 C 0.08 2.37 5.47 -17.82 -0.10 2.28 15 3 Si 0.90 23.33 26.18 -169.99 -4.45 18.88 15 4 H -0.24 -5.96 6.31 56.52 0.36 -5.61 15 5 H -0.32 -8.36 7.11 56.52 0.40 -7.96 15 6 H -0.27 -7.25 6.54 56.52 0.37 -6.88 15 7 C -0.55 -15.33 7.18 -34.44 -0.25 -15.57 15 8 H 0.07 2.15 7.11 -52.49 -0.37 1.78 15 9 C 0.17 4.17 2.64 -27.83 -0.07 4.09 15 10 H 0.06 1.56 7.20 -51.93 -0.37 1.19 15 11 C -0.13 -2.73 5.59 -26.59 -0.15 -2.87 15 12 C -0.11 -2.09 5.78 -26.55 -0.15 -2.24 15 13 C -0.14 -2.51 5.42 -26.59 -0.14 -2.65 15 14 C 0.10 2.10 2.55 -26.68 -0.07 2.03 15 15 H 0.07 1.65 7.09 -51.93 -0.37 1.29 15 16 C 0.07 1.23 6.45 -3.82 -0.02 1.20 15 17 N -0.84 -14.80 8.81 -10.37 -0.09 -14.89 15 18 O -0.38 -9.08 7.89 -35.23 -0.28 -9.35 15 19 H 0.26 7.59 8.31 -40.82 -0.34 7.26 15 20 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 21 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.07 1.54 6.85 -51.93 -0.36 1.18 15 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 15 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 15 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 28 H 0.34 6.22 8.97 -39.29 -0.35 5.86 15 29 H 0.33 4.65 9.08 -39.29 -0.36 4.29 15 LS Contribution 229.47 15.07 3.46 3.46 Total: -1.00 -30.94 229.47 -5.90 -36.84 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.35 Total: 5.48 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.96 Total: -13.74 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.68 Total: -41.56 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.28 Total: -9.35 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.45 Total: 18.88 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.94 -5.90 -36.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.050 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds