Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34634 * 116.99817 * 2 1 4 4 O 1.21513 * 119.99817 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99987 * 180.02562 * 3 2 1 6 6 C 1.47805 * 134.45584 * 359.86511 * 5 3 2 7 7 C 1.53950 * 86.03824 * 204.64698 * 6 5 3 8 8 C 1.47582 * 134.48994 * 180.02562 * 5 3 2 9 9 H 1.08994 * 113.87069 * 269.66733 * 8 5 3 10 10 C 1.50695 * 113.77053 * 41.05422 * 8 5 3 11 11 H 1.08001 * 120.00130 * 96.49808 * 10 8 5 12 12 C 1.37870 * 120.00131 * 276.48985 * 10 8 5 13 13 N 1.31510 * 120.00190 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00176 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47306 * 90.00274 * 14 12 10 16 16 H 1.48506 * 109.47282 * 210.00511 * 14 12 10 17 17 H 1.48503 * 109.47438 * 330.00337 * 14 12 10 18 18 H 1.08997 * 109.46453 * 179.97438 * 1 2 3 19 19 H 1.08991 * 109.46938 * 299.99654 * 1 2 3 20 20 H 1.08990 * 109.46984 * 60.00203 * 1 2 3 21 21 H 1.08999 * 113.77157 * 90.38364 * 6 5 3 22 22 H 1.09002 * 113.84143 * 318.91627 * 6 5 3 23 23 H 1.09002 * 113.74409 * 222.08469 * 7 6 5 24 24 H 1.09006 * 113.74165 * 90.87920 * 7 6 5 25 25 H 0.97004 * 120.00798 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.4982 0.2708 0.0013 7 6 5.3638 1.3726 0.6392 8 6 4.3869 2.3757 -0.0002 9 1 4.6830 2.7029 -0.9968 10 6 4.0106 3.5191 0.9064 11 1 4.4215 3.5753 1.9036 12 6 3.1419 4.4935 0.4629 13 7 2.6412 4.4250 -0.7512 14 14 2.6761 5.9112 1.5865 15 1 3.6346 7.0294 1.3962 16 1 1.3039 6.3738 1.2569 17 1 2.7192 5.4575 2.9999 18 1 -0.3632 -1.0277 -0.0005 19 1 -0.3633 0.5137 0.8899 20 1 -0.3633 0.5138 -0.8899 21 1 4.8261 -0.0235 -0.9956 22 1 4.3149 -0.5793 0.6584 23 1 6.3747 1.4257 0.2349 24 1 5.3414 1.3725 1.7290 25 1 2.0297 5.1103 -1.0632 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259877350.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = -63.112805 kcal Electronic energy + Delta-G solvation = -11690.605147 eV Core-core repulsion = 9477.078926 eV Total energy + Delta-G solvation = -2213.526221 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.01122 -39.24074 -36.60498 -34.49653 -30.77495 -28.68303 -27.86919 -24.78356 -22.97656 -20.54805 -19.02714 -18.37295 -17.52693 -17.06488 -16.43234 -15.62710 -15.08902 -14.36610 -14.03574 -13.80812 -13.54866 -12.87981 -12.81491 -12.65900 -12.41445 -12.02003 -11.74230 -11.48974 -11.14630 -10.85787 -10.40441 -9.18458 -8.13266 -6.29059 1.34844 1.38115 1.48093 1.60172 2.33242 2.43862 3.16487 3.50386 3.95435 4.38147 4.45870 4.51063 4.58031 4.65079 4.81767 4.94741 5.14166 5.32985 5.53230 5.69424 5.85032 6.21411 6.76137 7.34724 7.45928 7.86137 8.92608 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.037826 B = 0.018103 C = 0.013476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.061567 B = 1546.325124 C = 2077.322194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.393 6.393 3 C 0.633 3.367 4 O -0.581 6.581 5 N -0.634 5.634 6 C 0.103 3.897 7 C -0.130 4.130 8 C 0.264 3.736 9 H 0.034 0.966 10 C -0.557 4.557 11 H 0.061 0.939 12 C 0.042 3.958 13 N -0.870 5.870 14 Si 0.951 3.049 15 H -0.261 1.261 16 H -0.296 1.296 17 H -0.271 1.271 18 H 0.138 0.862 19 H 0.046 0.954 20 H 0.045 0.955 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -8.520 1.627 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.309 6.309 3 C 0.388 3.612 4 O -0.470 6.470 5 N -0.379 5.379 6 C -0.019 4.019 7 C -0.168 4.168 8 C 0.168 3.832 9 H 0.052 0.948 10 C -0.594 4.594 11 H 0.079 0.921 12 C -0.165 4.165 13 N -0.503 5.503 14 Si 0.777 3.223 15 H -0.186 1.186 16 H -0.222 1.222 17 H -0.196 1.196 18 H 0.156 0.844 19 H 0.065 0.935 20 H 0.064 0.936 21 H 0.109 0.891 22 H 0.106 0.894 23 H 0.120 0.880 24 H 0.099 0.901 25 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.192 -8.152 1.473 8.369 hybrid contribution -0.961 0.953 0.238 1.374 sum 0.231 -7.199 1.711 7.403 Atomic orbital electron populations 1.23227 0.74670 1.04684 1.01271 1.86213 1.24526 1.32048 1.88078 1.18353 0.83655 0.81643 0.77573 1.90982 1.64231 1.35638 1.56134 1.50749 0.99562 1.13840 1.73709 1.23287 0.84119 0.93390 1.01092 1.23444 0.98103 0.94529 1.00695 1.20413 0.80983 0.86751 0.95086 0.94797 1.21372 1.29583 1.07852 1.00629 0.92059 1.25731 0.94854 0.99969 0.95942 1.70036 1.28610 1.33330 1.18359 0.85690 0.77165 0.79937 0.79484 1.18590 1.22234 1.19573 0.84377 0.93470 0.93611 0.89056 0.89441 0.87960 0.90084 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.86 10.56 113.37 1.20 3.06 15 2 O -0.39 -16.85 10.55 -55.43 -0.58 -17.43 15 3 C 0.63 33.31 8.81 129.79 1.14 34.46 15 4 O -0.58 -35.52 13.79 19.80 0.27 -35.25 15 5 N -0.63 -30.91 3.49 -947.81 -3.31 -34.21 15 6 C 0.10 3.57 8.89 86.44 0.77 4.33 15 7 C -0.13 -4.67 7.84 31.25 0.24 -4.43 15 8 C 0.26 13.29 3.96 44.35 0.18 13.47 15 9 H 0.03 1.85 8.12 -2.39 -0.02 1.83 15 10 C -0.56 -31.58 8.65 25.60 0.22 -31.36 15 11 H 0.06 3.37 7.81 -2.91 -0.02 3.35 15 12 C 0.04 2.46 4.56 84.65 0.39 2.84 15 13 N -0.87 -54.47 11.59 21.44 0.25 -54.22 15 14 Si 0.95 46.74 29.54 68.60 2.03 48.76 15 15 H -0.26 -11.86 7.11 99.48 0.71 -11.16 15 16 H -0.30 -14.86 7.11 99.48 0.71 -14.15 15 17 H -0.27 -13.00 7.11 99.48 0.71 -12.29 15 18 H 0.14 3.09 8.14 -2.39 -0.02 3.08 15 19 H 0.05 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 22 H 0.09 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.10 2.95 8.14 -2.39 -0.02 2.93 15 24 H 0.08 2.91 8.09 -2.38 -0.02 2.89 15 25 H 0.26 15.57 8.31 -92.71 -0.77 14.80 15 Total: -1.00 -74.20 224.72 3.97 -70.24 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: 1.17 Total: -0.27 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 4.14 Total: 22.38 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -3.06 Total: -88.43 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.31 Total: -52.68 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.20 3.97 -70.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877350.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.123 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds