Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00421 * 2 1 4 4 H 1.48507 * 109.46818 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47355 * 119.99190 * 3 2 1 6 6 H 1.48496 * 109.46995 * 239.99856 * 3 2 1 7 7 C 1.37883 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00110 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.68121 * 354.89131 * 9 7 2 11 11 C 1.53299 * 109.67930 * 234.37783 * 9 7 2 12 12 O 1.42977 * 109.21473 * 188.01047 * 11 9 7 13 13 C 1.42965 * 114.20109 * 62.52447 * 12 11 9 14 14 C 1.53304 * 109.21938 * 297.43469 * 13 12 11 15 15 N 1.47147 * 108.38363 * 52.30444 * 14 13 12 16 16 C 1.34772 * 120.98203 * 129.44387 * 15 14 13 17 17 O 1.21286 * 120.00124 * 184.90486 * 16 15 14 18 18 H 0.96998 * 119.99829 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.50769 * 307.89200 * 11 9 7 20 20 H 1.08997 * 109.51530 * 68.04906 * 11 9 7 21 21 H 1.09001 * 109.51371 * 177.51182 * 13 12 11 22 22 H 1.09003 * 109.51572 * 57.35615 * 13 12 11 23 23 H 1.08996 * 109.67972 * 292.58006 * 14 13 12 24 24 H 1.09004 * 109.67621 * 172.02433 * 14 13 12 25 25 H 1.08001 * 120.00305 * 4.91097 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.1820 -2.3059 0.0915 11 6 1.7204 -3.3664 1.1743 12 8 1.1406 -4.6682 1.0589 13 6 1.5328 -5.3825 -0.1158 14 6 1.0529 -4.6181 -1.3550 15 7 1.5184 -3.2261 -1.2507 16 6 2.1709 -2.6344 -2.2708 17 8 2.6247 -1.5180 -2.1342 18 1 -0.4850 0.8400 -0.0004 19 1 2.8071 -3.4493 1.1538 20 1 1.4069 -2.9094 2.1128 21 1 1.0844 -6.3759 -0.1045 22 1 2.6188 -5.4727 -0.1415 23 1 -0.0359 -4.6387 -1.4002 24 1 1.4670 -5.0773 -2.2527 25 1 2.2895 -3.1544 -3.2099 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259883671.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -62.161269 kcal Electronic energy + Delta-G solvation = -11843.252527 eV Core-core repulsion = 9629.767568 eV Total energy + Delta-G solvation = -2213.484959 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.00990 -36.94062 -33.69627 -32.79210 -30.26271 -27.24436 -24.88119 -22.60118 -21.90206 -19.01246 -16.98510 -15.99951 -15.28572 -15.08960 -14.39055 -14.14075 -13.77925 -13.49411 -12.75974 -12.08440 -11.97297 -11.27473 -10.97054 -10.78107 -10.52170 -10.17526 -9.85176 -9.51382 -9.09853 -8.85553 -7.98235 -7.26307 -5.95662 -3.80052 3.42336 3.46353 3.56520 3.95158 4.12284 4.48572 4.64678 5.41802 5.43584 5.49915 5.63031 5.70680 6.00176 6.20371 6.33422 6.55177 6.70386 7.37617 7.72226 7.84966 8.01297 8.14899 8.72943 9.08390 9.47971 9.67679 11.13894 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.054860 B = 0.015875 C = 0.013911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.263503 B = 1763.331446 C = 2012.367778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.058 0.942 9 C 0.216 3.784 10 H 0.079 0.921 11 C 0.056 3.944 12 O -0.398 6.398 13 C 0.054 3.946 14 C 0.074 3.926 15 N -0.623 5.623 16 C 0.484 3.516 17 O -0.509 6.509 18 H 0.261 0.739 19 H 0.037 0.963 20 H 0.094 0.906 21 H 0.090 0.910 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -8.900 -1.722 9.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.117 3.883 10 H 0.097 0.903 11 C -0.020 4.020 12 O -0.317 6.317 13 C -0.025 4.025 14 C -0.051 4.051 15 N -0.363 5.363 16 C 0.252 3.748 17 O -0.380 6.380 18 H 0.071 0.929 19 H 0.055 0.945 20 H 0.112 0.888 21 H 0.108 0.892 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.801 -8.205 -1.527 8.538 hybrid contribution 0.517 0.783 -0.459 1.044 sum 2.318 -7.422 -1.986 8.025 Atomic orbital electron populations 1.69866 1.06058 1.26878 1.51464 1.24819 0.94746 0.99476 0.94508 0.86458 0.79446 0.82295 0.78607 1.21719 1.20520 1.19904 1.20697 0.93021 0.88777 1.47239 0.92344 1.19952 0.99970 0.89623 0.78771 0.90304 1.23421 0.96234 0.81195 1.01197 1.87847 1.71697 1.30709 1.41439 1.22768 0.98654 0.94976 0.86061 1.22198 0.99863 0.84776 0.98237 1.49512 1.56714 1.11612 1.18412 1.21991 0.78900 0.87622 0.86319 1.90797 1.45570 1.19553 1.82093 0.92906 0.94480 0.88781 0.89238 0.93755 0.91802 0.90859 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 12.62 55.43 0.70 -26.39 15 2 C 0.07 1.92 5.37 -17.82 -0.10 1.83 15 3 Si 0.90 23.24 29.54 -169.99 -5.02 18.22 15 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 15 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.27 -7.26 7.11 56.52 0.40 -6.86 15 7 C -0.46 -13.05 5.22 -34.44 -0.18 -13.23 15 8 H 0.06 1.73 7.31 -52.49 -0.38 1.34 15 9 C 0.22 5.47 3.38 -68.57 -0.23 5.24 15 10 H 0.08 2.25 6.94 -51.93 -0.36 1.89 15 11 C 0.06 1.24 6.27 37.31 0.23 1.48 15 12 O -0.40 -7.93 10.74 -35.23 -0.38 -8.31 15 13 C 0.05 0.84 6.99 37.31 0.26 1.10 15 14 C 0.07 1.21 6.72 -3.53 -0.02 1.18 15 15 N -0.62 -13.63 3.02 -171.11 -0.52 -14.15 15 16 C 0.48 10.75 11.75 54.05 0.64 11.39 15 17 O -0.51 -13.90 13.77 5.55 0.08 -13.82 15 18 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 19 H 0.04 0.80 8.13 -51.93 -0.42 0.38 15 20 H 0.09 2.05 8.14 -51.93 -0.42 1.62 15 21 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.07 0.92 7.88 -51.93 -0.41 0.51 15 25 H 0.08 1.36 7.96 -52.49 -0.42 0.94 15 LS Contribution 215.81 15.07 3.25 3.25 Total: -1.00 -32.99 215.81 -4.11 -37.10 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -2.82 Total: -4.90 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 0.60 Total: 9.00 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.18 Total: -40.54 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.30 Total: -22.13 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -32.99 -4.11 -37.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883671.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.063 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds