Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00421 * 2 1 4 4 H 1.48507 * 109.46818 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47355 * 119.99190 * 3 2 1 6 6 H 1.48496 * 109.46995 * 239.99856 * 3 2 1 7 7 C 1.37883 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00110 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.68121 * 354.89131 * 9 7 2 11 11 C 1.53299 * 109.67930 * 234.37783 * 9 7 2 12 12 O 1.42977 * 109.21473 * 188.01047 * 11 9 7 13 13 C 1.42965 * 114.20109 * 62.52447 * 12 11 9 14 14 C 1.53304 * 109.21938 * 297.43469 * 13 12 11 15 15 N 1.47147 * 108.38363 * 52.30444 * 14 13 12 16 16 C 1.34772 * 120.98203 * 129.44387 * 15 14 13 17 17 O 1.21286 * 120.00124 * 184.90486 * 16 15 14 18 18 H 0.96998 * 119.99829 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.50769 * 307.89200 * 11 9 7 20 20 H 1.08997 * 109.51530 * 68.04906 * 11 9 7 21 21 H 1.09001 * 109.51371 * 177.51182 * 13 12 11 22 22 H 1.09003 * 109.51572 * 57.35615 * 13 12 11 23 23 H 1.08996 * 109.67972 * 292.58006 * 14 13 12 24 24 H 1.09004 * 109.67621 * 172.02433 * 14 13 12 25 25 H 1.08001 * 120.00305 * 4.91097 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.1820 -2.3059 0.0915 11 6 1.7204 -3.3664 1.1743 12 8 1.1406 -4.6682 1.0589 13 6 1.5328 -5.3825 -0.1158 14 6 1.0529 -4.6181 -1.3550 15 7 1.5184 -3.2261 -1.2507 16 6 2.1709 -2.6344 -2.2708 17 8 2.6247 -1.5180 -2.1342 18 1 -0.4850 0.8400 -0.0004 19 1 2.8071 -3.4493 1.1538 20 1 1.4069 -2.9094 2.1128 21 1 1.0844 -6.3759 -0.1045 22 1 2.6188 -5.4727 -0.1415 23 1 -0.0359 -4.6387 -1.4002 24 1 1.4670 -5.0773 -2.2527 25 1 2.2895 -3.1544 -3.2099 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259883671.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -87.441826 kcal Electronic energy + Delta-G solvation = -11844.348775 eV Core-core repulsion = 9629.767568 eV Total energy + Delta-G solvation = -2214.581206 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.69243 -38.65440 -35.51064 -34.73573 -32.03097 -28.91930 -26.82619 -24.33609 -23.48787 -20.74727 -18.97819 -17.70305 -17.01506 -16.73962 -16.24323 -15.82334 -15.43549 -15.22180 -14.50117 -13.99612 -13.73106 -13.01292 -12.84104 -12.72167 -12.34295 -11.83770 -11.73826 -11.31827 -10.94087 -10.85054 -10.00449 -9.04261 -8.13232 -5.99679 1.35209 1.41075 1.49563 2.22389 2.42461 2.52725 3.10787 3.32870 4.09353 4.12744 4.35706 4.37992 4.55223 4.70496 4.78414 4.98460 5.04561 5.41088 5.70328 5.88100 6.06565 6.40301 6.81232 7.04701 7.47975 7.77664 8.96307 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.054860 B = 0.015875 C = 0.013911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.263503 B = 1763.331446 C = 2012.367778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.283 1.283 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.456 4.456 8 H 0.040 0.960 9 C 0.214 3.786 10 H 0.041 0.959 11 C 0.072 3.928 12 O -0.408 6.408 13 C 0.045 3.955 14 C 0.071 3.929 15 N -0.630 5.630 16 C 0.475 3.525 17 O -0.570 6.570 18 H 0.259 0.741 19 H 0.040 0.960 20 H 0.086 0.914 21 H 0.133 0.867 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -10.833 -2.477 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.209 1.209 5 H -0.190 1.190 6 H -0.215 1.215 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.112 3.888 10 H 0.059 0.941 11 C -0.005 4.005 12 O -0.327 6.327 13 C -0.032 4.032 14 C -0.052 4.052 15 N -0.367 5.367 16 C 0.245 3.755 17 O -0.445 6.445 18 H 0.068 0.932 19 H 0.058 0.942 20 H 0.105 0.895 21 H 0.151 0.849 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.321 -10.194 -2.280 10.701 hybrid contribution 0.364 1.183 -0.309 1.276 sum 2.684 -9.011 -2.590 9.752 Atomic orbital electron populations 1.69972 1.07002 1.27123 1.53841 1.25447 0.95476 1.02222 0.95212 0.85685 0.78450 0.79615 0.78284 1.20895 1.19009 1.21466 1.20804 0.92192 0.90492 1.45992 0.94125 1.19663 0.97348 0.90028 0.81744 0.94132 1.22995 0.96137 0.82037 0.99364 1.87832 1.71828 1.29369 1.43702 1.23168 0.99829 0.96114 0.84046 1.22539 1.00206 0.81568 1.00890 1.49399 1.56344 1.13858 1.17139 1.23093 0.77437 0.87090 0.87852 1.90769 1.48182 1.22486 1.83103 0.93184 0.94189 0.89542 0.84897 0.92749 0.91774 0.85769 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 12.62 21.45 0.27 -57.49 15 2 C 0.01 0.80 5.37 84.66 0.45 1.26 15 3 Si 0.95 48.64 29.54 68.60 2.03 50.67 15 4 H -0.28 -13.94 7.11 99.48 0.71 -13.23 15 5 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.29 -15.28 7.11 99.48 0.71 -14.57 15 7 C -0.46 -26.39 5.22 25.60 0.13 -26.26 15 8 H 0.04 2.45 7.31 -2.91 -0.02 2.43 15 9 C 0.21 10.87 3.38 44.22 0.15 11.02 15 10 H 0.04 2.38 6.94 -2.38 -0.02 2.36 15 11 C 0.07 3.14 6.27 72.08 0.45 3.59 15 12 O -0.41 -15.35 10.74 -148.98 -1.60 -16.95 15 13 C 0.05 1.23 6.99 72.08 0.50 1.74 15 14 C 0.07 2.01 6.72 86.36 0.58 2.59 15 15 N -0.63 -26.27 3.02 -813.67 -2.46 -28.72 15 16 C 0.47 20.02 11.75 129.79 1.53 21.54 15 17 O -0.57 -31.02 13.77 -3.05 -0.04 -31.06 15 18 H 0.26 15.33 8.31 -92.71 -0.77 14.56 15 19 H 0.04 1.70 8.13 -2.39 -0.02 1.68 15 20 H 0.09 3.80 8.14 -2.39 -0.02 3.78 15 21 H 0.13 2.52 8.14 -2.39 -0.02 2.50 15 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.12 2.32 7.88 -2.38 -0.02 2.30 15 25 H 0.15 4.32 7.96 -2.91 -0.02 4.30 15 Total: -1.00 -73.97 215.81 3.17 -70.80 By element: Atomic # 1 Polarization: -3.88 SS G_CDS: 1.17 Total: -2.71 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 3.80 Total: 15.47 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.19 Total: -86.22 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -1.64 Total: -48.02 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -73.97 3.17 -70.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883671.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.642 kcal (2) G-P(sol) polarization free energy of solvation -73.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds