Wall clock time and date at job start Mon Mar 30 2020 02:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48503 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46863 * 299.99316 * 3 2 1 6 6 H 1.48498 * 109.47635 * 59.99482 * 3 2 1 7 7 C 1.37878 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47089 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.52314 * 54.99679 * 10 9 7 12 12 C 1.53095 * 109.52022 * 294.87296 * 10 9 7 13 13 O 1.42900 * 109.41084 * 182.42336 * 12 10 9 14 14 C 1.42909 * 114.10163 * 61.15623 * 13 12 10 15 15 C 1.53092 * 109.41369 * 298.84292 * 14 13 12 16 16 C 1.53170 * 109.16424 * 57.60525 * 15 14 13 17 17 H 1.09009 * 109.54383 * 62.88558 * 16 15 14 18 18 N 1.46900 * 109.54440 * 183.14961 * 16 15 14 19 19 H 0.97004 * 119.99006 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47684 * 59.99604 * 9 7 2 21 21 H 1.09001 * 109.47253 * 299.99438 * 9 7 2 22 22 H 1.09001 * 109.48126 * 302.40029 * 12 10 9 23 23 H 1.08997 * 109.48173 * 62.43160 * 12 10 9 24 24 H 1.09001 * 109.47365 * 58.82217 * 14 13 12 25 25 H 1.08998 * 109.48047 * 178.85506 * 14 13 12 26 26 H 1.08998 * 109.51601 * 177.51225 * 15 14 13 27 27 H 1.08993 * 109.52203 * 297.63544 * 15 14 13 28 28 H 1.00892 * 111.00120 * 299.56084 * 18 16 15 29 29 H 1.00902 * 110.99723 * 63.51097 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9298 -3.5561 0.8421 12 6 3.0389 -3.6566 -1.3086 13 8 3.9266 -4.7762 -1.3304 14 6 3.2693 -6.0435 -1.2670 15 6 2.4848 -6.1449 0.0437 16 6 1.4855 -4.9867 0.1225 17 1 0.7655 -5.0704 -0.6917 18 7 0.7809 -5.0324 1.4106 19 1 -0.4849 0.8402 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.3506 -3.7220 -2.1513 23 1 3.6150 -2.7342 -1.3805 24 1 2.5841 -6.1400 -2.1092 25 1 4.0116 -6.8405 -1.3090 26 1 1.9473 -7.0926 0.0740 27 1 3.1744 -6.0901 0.8860 28 1 0.2722 -5.8975 1.5140 29 1 1.4214 -4.8956 2.1782 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952892.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:50 Heat of formation + Delta-G solvation = -66.604068 kcal Electronic energy + Delta-G solvation = -11734.450094 eV Core-core repulsion = 9656.605575 eV Total energy + Delta-G solvation = -2077.844519 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.05908 -35.09278 -33.27541 -31.21241 -29.71670 -26.63400 -23.76637 -23.10461 -21.02727 -19.42107 -16.27074 -15.74659 -15.58729 -15.28286 -14.46449 -14.11728 -13.57710 -13.17267 -12.58731 -12.08066 -11.86097 -11.37281 -11.07032 -10.86709 -10.85770 -10.40508 -10.04211 -9.89660 -9.28112 -9.12983 -8.80687 -8.30974 -8.04922 -5.92940 -3.94963 3.34743 3.42433 3.46455 4.36291 4.51077 4.94790 5.11801 5.24576 5.37459 5.42819 5.61004 5.77210 5.93024 6.01229 6.13928 6.18328 6.36130 6.74319 6.86983 7.07125 7.59683 7.71082 7.81121 7.87511 7.97656 8.13842 8.49563 9.13207 9.68398 11.17987 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055200 B = 0.011334 C = 0.009919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.125809 B = 2469.841457 C = 2822.153250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.036 3.964 10 C -0.105 4.105 11 H 0.062 0.938 12 C 0.071 3.929 13 O -0.394 6.394 14 C 0.067 3.933 15 C -0.190 4.190 16 C 0.093 3.907 17 H 0.075 0.925 18 N -0.831 5.831 19 H 0.258 0.742 20 H 0.011 0.989 21 H 0.037 0.963 22 H 0.044 0.956 23 H 0.104 0.896 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.329 0.671 29 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -10.607 -0.576 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.002 4.002 10 C -0.124 4.124 11 H 0.081 0.919 12 C -0.005 4.005 13 O -0.313 6.313 14 C -0.011 4.011 15 C -0.230 4.230 16 C -0.019 4.019 17 H 0.093 0.907 18 N -0.358 5.358 19 H 0.068 0.932 20 H 0.030 0.970 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.122 0.878 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.544 -9.816 -0.846 10.470 hybrid contribution 0.688 0.045 0.258 0.736 sum 4.232 -9.771 -0.588 10.664 Atomic orbital electron populations 1.69995 1.05996 1.26267 1.50976 1.25004 0.94777 0.99074 0.95498 0.86613 0.80180 0.84157 0.77510 1.19770 1.21115 1.21105 1.21353 0.92925 0.91273 1.50360 0.92745 1.19015 0.93261 0.89688 0.98196 1.21864 0.98188 0.95118 0.97243 0.91933 1.22788 0.92825 0.88094 0.96787 1.87882 1.34712 1.14075 1.94649 1.22367 0.96157 0.86809 0.95789 1.23120 1.00146 1.00086 0.99629 1.21619 0.93595 0.94261 0.92380 0.90730 1.58771 1.32363 1.41028 1.03676 0.93185 0.97047 0.94452 0.93751 0.87794 0.93700 0.90000 0.92026 0.91608 0.85913 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.29 55.43 0.74 -26.43 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 15 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 7 C -0.52 -14.68 8.44 -34.44 -0.29 -14.97 15 8 H 0.05 1.50 7.07 -52.49 -0.37 1.12 15 9 C 0.04 0.92 4.39 -27.88 -0.12 0.80 15 10 C -0.10 -2.19 1.96 -90.48 -0.18 -2.37 15 11 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 12 C 0.07 1.41 5.90 37.21 0.22 1.63 15 13 O -0.39 -7.19 10.77 -35.23 -0.38 -7.57 15 14 C 0.07 0.97 6.84 37.21 0.25 1.22 15 15 C -0.19 -2.69 5.71 -26.60 -0.15 -2.84 15 16 C 0.09 1.61 2.75 -67.53 -0.19 1.42 15 17 H 0.07 1.35 8.14 -51.92 -0.42 0.92 15 18 N -0.83 -13.60 8.57 -4.51 -0.04 -13.63 15 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 20 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 21 H 0.04 1.05 7.58 -51.93 -0.39 0.66 15 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.10 2.18 7.04 -51.93 -0.37 1.81 15 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 28 H 0.33 4.40 9.04 -39.30 -0.36 4.04 15 29 H 0.34 5.24 8.98 -39.29 -0.35 4.89 15 LS Contribution 238.09 15.07 3.59 3.59 Total: -1.00 -30.62 238.09 -6.02 -36.65 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.35 Total: 4.11 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.55 Total: -13.53 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.70 Total: -40.07 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.38 Total: -7.57 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.62 -6.02 -36.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952892.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.959 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds