Wall clock time and date at job start Mon Mar 30 2020 02:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.52123 * 54.87505 * 10 9 7 12 12 C 1.53087 * 109.52046 * 294.68488 * 10 9 7 13 13 O 1.42901 * 109.41616 * 182.48430 * 12 10 9 14 14 C 1.42906 * 114.09938 * 61.15604 * 13 12 10 15 15 C 1.53086 * 109.41330 * 298.84798 * 14 13 12 16 16 C 1.53173 * 109.16793 * 57.60643 * 15 14 13 17 17 H 1.09001 * 109.61694 * 183.10658 * 16 15 14 18 18 N 1.46901 * 109.54439 * 62.88238 * 16 15 14 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.08998 * 109.48104 * 302.46778 * 12 10 9 23 23 H 1.09008 * 109.48173 * 62.50194 * 12 10 9 24 24 H 1.08999 * 109.48021 * 178.85902 * 14 13 12 25 25 H 1.09008 * 109.48350 * 58.83298 * 14 13 12 26 26 H 1.09007 * 109.52128 * 297.69359 * 15 14 13 27 27 H 1.09004 * 109.52070 * 177.51595 * 15 14 13 28 28 H 1.00899 * 110.99935 * 60.44898 * 18 16 15 29 29 H 1.00897 * 110.99920 * 184.40055 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9312 -3.5549 0.8397 12 6 3.0357 -3.6594 -1.3116 13 8 3.9224 -4.7797 -1.3340 14 6 3.2641 -6.0464 -1.2670 15 6 2.4828 -6.1449 0.0458 16 6 1.4847 -4.9858 0.1253 17 1 0.9629 -5.0171 1.0818 18 7 0.5116 -5.0993 -0.9693 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.3453 -3.7254 -2.1524 23 1 3.6127 -2.7376 -1.3863 24 1 4.0057 -6.8441 -1.3095 25 1 2.5767 -6.1438 -2.1073 26 1 3.1745 -6.0884 0.8865 27 1 1.9445 -7.0922 0.0791 28 1 -0.0028 -5.9652 -0.9075 29 1 -0.1136 -4.3075 -0.9809 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952900.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:53 Heat of formation + Delta-G solvation = -66.095266 kcal Electronic energy + Delta-G solvation = -11821.813054 eV Core-core repulsion = 9743.990599 eV Total energy + Delta-G solvation = -2077.822456 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.98899 -34.91534 -33.20356 -31.16505 -29.55911 -26.67393 -23.79401 -23.61300 -20.94416 -18.51791 -16.53326 -15.67865 -15.39253 -15.00314 -14.57918 -14.41834 -13.71845 -12.48539 -12.41209 -12.14876 -12.00308 -11.34547 -11.29659 -10.90459 -10.72099 -10.29311 -10.08854 -9.80069 -9.21351 -8.98460 -8.94634 -8.35969 -8.04990 -6.02448 -4.04196 3.31926 3.38382 3.42359 4.45068 4.57509 4.99200 5.25309 5.33978 5.45848 5.54485 5.83299 5.91334 6.07256 6.10683 6.35684 6.39208 6.46899 6.78285 6.93165 7.02389 7.57678 7.62162 7.75200 7.92117 7.92953 7.96658 8.39899 9.01822 9.60144 11.08790 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.062487 B = 0.011208 C = 0.010069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.987820 B = 2497.566544 C = 2780.250813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.108 4.108 11 H 0.065 0.935 12 C 0.082 3.918 13 O -0.398 6.398 14 C 0.072 3.928 15 C -0.147 4.147 16 C 0.090 3.910 17 H 0.030 0.970 18 N -0.845 5.845 19 H 0.260 0.740 20 H 0.013 0.987 21 H 0.024 0.976 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.327 0.673 29 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 -9.635 -0.889 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.127 4.127 11 H 0.083 0.917 12 C 0.006 3.994 13 O -0.317 6.317 14 C -0.005 4.005 15 C -0.185 4.185 16 C -0.021 4.021 17 H 0.048 0.952 18 N -0.377 5.377 19 H 0.070 0.930 20 H 0.031 0.969 21 H 0.042 0.958 22 H 0.073 0.927 23 H 0.112 0.888 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.138 0.862 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.070 -9.456 -1.381 10.037 hybrid contribution -0.719 0.912 0.952 1.502 sum 2.351 -8.544 -0.429 8.872 Atomic orbital electron populations 1.69954 1.06064 1.26623 1.50898 1.25015 0.94832 0.99261 0.95257 0.86604 0.79942 0.83467 0.78088 1.20730 1.19760 1.21255 1.21244 0.93072 0.90883 1.50509 0.92484 1.19081 0.93634 0.91000 0.97139 1.21857 0.98424 0.94299 0.98155 0.91708 1.22571 0.92498 0.87381 0.96947 1.87826 1.34828 1.14335 1.94716 1.22303 0.95650 0.86150 0.96442 1.22207 0.98675 0.98107 0.99514 1.21431 0.92887 0.95938 0.91826 0.95176 1.58810 1.22717 1.07365 1.48804 0.93022 0.96903 0.95783 0.92743 0.88846 0.90751 0.92589 0.91435 0.92146 0.86181 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 15 7 C -0.52 -14.41 8.45 -34.44 -0.29 -14.70 15 8 H 0.06 1.56 7.08 -52.49 -0.37 1.18 15 9 C 0.03 0.72 3.89 -27.89 -0.11 0.61 15 10 C -0.11 -2.28 2.16 -90.48 -0.20 -2.48 15 11 H 0.06 1.42 8.14 -51.93 -0.42 1.00 15 12 C 0.08 1.70 5.74 37.20 0.21 1.91 15 13 O -0.40 -7.70 10.77 -35.23 -0.38 -8.08 15 14 C 0.07 1.13 6.68 37.20 0.25 1.38 15 15 C -0.15 -2.21 5.80 -26.60 -0.15 -2.37 15 16 C 0.09 1.59 3.16 -67.53 -0.21 1.37 15 17 H 0.03 0.54 8.14 -51.93 -0.42 0.11 15 18 N -0.85 -13.73 7.99 -4.51 -0.04 -13.77 15 19 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 20 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 15 21 H 0.02 0.63 6.82 -51.93 -0.35 0.27 15 22 H 0.05 1.15 7.75 -51.93 -0.40 0.74 15 23 H 0.09 2.04 7.05 -51.92 -0.37 1.68 15 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 25 H 0.06 0.89 7.75 -51.92 -0.40 0.49 15 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.33 4.37 9.04 -39.29 -0.36 4.02 15 29 H 0.35 6.23 7.07 -39.29 -0.28 5.95 15 LS Contribution 233.96 15.07 3.53 3.53 Total: -1.00 -29.39 233.96 -5.97 -35.36 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.20 Total: 4.89 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.60 Total: -12.74 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.70 Total: -39.55 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.38 Total: -8.08 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.39 -5.97 -35.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952900.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.731 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds