Wall clock time and date at job start Mon Mar 30 2020 02:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.52123 * 54.87505 * 10 9 7 12 12 C 1.53087 * 109.52046 * 294.68488 * 10 9 7 13 13 O 1.42901 * 109.41616 * 182.48430 * 12 10 9 14 14 C 1.42906 * 114.09938 * 61.15604 * 13 12 10 15 15 C 1.53086 * 109.41330 * 298.84798 * 14 13 12 16 16 C 1.53173 * 109.16793 * 57.60643 * 15 14 13 17 17 H 1.09001 * 109.61694 * 183.10658 * 16 15 14 18 18 N 1.46901 * 109.54439 * 62.88238 * 16 15 14 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.08998 * 109.48104 * 302.46778 * 12 10 9 23 23 H 1.09008 * 109.48173 * 62.50194 * 12 10 9 24 24 H 1.08999 * 109.48021 * 178.85902 * 14 13 12 25 25 H 1.09008 * 109.48350 * 58.83298 * 14 13 12 26 26 H 1.09007 * 109.52128 * 297.69359 * 15 14 13 27 27 H 1.09004 * 109.52070 * 177.51595 * 15 14 13 28 28 H 1.00899 * 110.99935 * 60.44898 * 18 16 15 29 29 H 1.00897 * 110.99920 * 184.40055 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9312 -3.5549 0.8397 12 6 3.0357 -3.6594 -1.3116 13 8 3.9224 -4.7797 -1.3340 14 6 3.2641 -6.0464 -1.2670 15 6 2.4828 -6.1449 0.0458 16 6 1.4847 -4.9858 0.1253 17 1 0.9629 -5.0171 1.0818 18 7 0.5116 -5.0993 -0.9693 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.3453 -3.7254 -2.1524 23 1 3.6127 -2.7376 -1.3863 24 1 4.0057 -6.8441 -1.3095 25 1 2.5767 -6.1438 -2.1073 26 1 3.1745 -6.0884 0.8865 27 1 1.9445 -7.0922 0.0791 28 1 -0.0028 -5.9652 -0.9075 29 1 -0.1136 -4.3075 -0.9809 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259952900.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:53 Heat of formation + Delta-G solvation = -87.351428 kcal Electronic energy + Delta-G solvation = -11822.734791 eV Core-core repulsion = 9743.990599 eV Total energy + Delta-G solvation = -2078.744192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.48613 -36.49423 -35.10938 -32.95548 -30.91526 -28.56742 -25.62351 -25.10451 -22.60881 -20.06755 -18.58138 -17.17085 -16.91069 -16.53914 -16.40476 -15.93614 -15.19789 -14.33008 -13.94334 -13.84391 -13.59253 -13.20588 -12.81535 -12.77700 -12.43584 -12.06932 -11.79733 -11.52508 -10.94430 -10.85007 -10.61624 -10.40802 -9.43001 -8.19594 -6.28716 1.40360 1.40828 1.52147 2.41398 3.09875 3.18071 3.66173 3.91454 4.07347 4.23320 4.24474 4.51269 4.69453 4.80235 4.90308 4.95871 5.06722 5.11153 5.24403 5.35803 5.48112 5.70614 5.83988 6.19882 6.29682 6.44444 6.67532 6.86513 7.39893 8.91703 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.062487 B = 0.011208 C = 0.010069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.987820 B = 2497.566544 C = 2780.250813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.057 0.943 9 C 0.040 3.960 10 C -0.103 4.103 11 H 0.053 0.947 12 C 0.094 3.906 13 O -0.409 6.409 14 C 0.064 3.936 15 C -0.139 4.139 16 C 0.092 3.908 17 H 0.027 0.973 18 N -0.843 5.843 19 H 0.263 0.737 20 H -0.014 1.014 21 H 0.009 0.991 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.347 0.653 29 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -10.585 -0.988 11.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.189 1.189 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.075 0.925 9 C 0.003 3.997 10 C -0.123 4.123 11 H 0.071 0.929 12 C 0.017 3.983 13 O -0.328 6.328 14 C -0.012 4.012 15 C -0.177 4.177 16 C -0.019 4.019 17 H 0.045 0.955 18 N -0.376 5.376 19 H 0.072 0.928 20 H 0.005 0.995 21 H 0.027 0.973 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.124 0.876 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.160 0.840 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.870 -10.440 -1.480 11.232 hybrid contribution -0.983 1.140 0.979 1.796 sum 2.887 -9.300 -0.501 9.751 Atomic orbital electron populations 1.70070 1.07563 1.27636 1.51785 1.25876 0.95708 1.02978 0.94849 0.85547 0.78796 0.78976 0.78368 1.20008 1.18942 1.20731 1.21642 0.93344 0.92309 1.50241 0.92525 1.18891 0.93775 0.92055 0.95013 1.21704 0.97639 0.94905 0.98016 0.92864 1.22255 0.92055 0.87685 0.96267 1.87806 1.35032 1.15216 1.94775 1.22609 0.96730 0.85099 0.96809 1.22178 0.98092 0.98257 0.99213 1.21360 0.93458 0.95019 0.92096 0.95459 1.58763 1.22686 1.07997 1.48147 0.92844 0.99520 0.97270 0.93394 0.90746 0.87561 0.92491 0.91148 0.88829 0.83978 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 15 2 C 0.00 0.22 5.46 84.66 0.46 0.68 15 3 Si 0.96 44.44 29.54 68.60 2.03 46.46 15 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 7 C -0.54 -30.32 8.45 25.60 0.22 -30.11 15 8 H 0.06 3.13 7.08 -2.91 -0.02 3.11 15 9 C 0.04 2.05 3.89 29.85 0.12 2.17 15 10 C -0.10 -4.37 2.16 -10.70 -0.02 -4.39 15 11 H 0.05 2.35 8.14 -2.39 -0.02 2.33 15 12 C 0.09 3.87 5.74 72.01 0.41 4.28 15 13 O -0.41 -15.18 10.77 -148.98 -1.60 -16.78 15 14 C 0.06 1.82 6.68 72.01 0.48 2.30 15 15 C -0.14 -3.77 5.80 30.68 0.18 -3.59 15 16 C 0.09 3.11 3.16 45.03 0.14 3.25 15 17 H 0.03 0.94 8.14 -2.39 -0.02 0.92 15 18 N -0.84 -26.34 7.99 -168.18 -1.34 -27.68 15 19 H 0.26 14.88 8.31 -92.71 -0.77 14.10 15 20 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 15 21 H 0.01 0.49 6.82 -2.39 -0.02 0.47 15 22 H 0.05 2.02 7.75 -2.39 -0.02 2.00 15 23 H 0.07 3.30 7.05 -2.38 -0.02 3.28 15 24 H 0.11 2.40 8.14 -2.39 -0.02 2.38 15 25 H 0.06 1.64 7.75 -2.38 -0.02 1.62 15 26 H 0.07 1.90 8.14 -2.38 -0.02 1.88 15 27 H 0.09 1.96 8.14 -2.38 -0.02 1.94 15 28 H 0.35 8.47 9.04 -89.69 -0.81 7.66 15 29 H 0.34 12.09 7.07 -89.70 -0.63 11.45 15 Total: -1.00 -62.50 233.96 1.05 -61.45 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -0.30 Total: 17.50 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 1.99 Total: -25.40 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -1.06 Total: -83.22 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.60 Total: -16.78 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.50 1.05 -61.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952900.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.897 kcal (2) G-P(sol) polarization free energy of solvation -62.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds